Gene detail information of Glyur000234s00015079 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02150.1 | 3.00E-156 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004504624.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At2g02150-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P0C894|PP143_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At2g02150 |
| trEMBL | tr|K7L5N5|K7L5N5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G09601.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00234 | 106725 | 111066 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000234s00015079.1 | PF01535.15 | PPR | 186 | 211 | 0.22 |
| Glyur000234s00015079.1 | PF01535.15 | PPR | 218 | 247 | 0.42 |
| Glyur000234s00015079.1 | PF13041.1 | PPR_2 | 249 | 296 | 1.50E-16 |
| Glyur000234s00015079.1 | PF13041.1 | PPR_2 | 319 | 368 | 6.50E-20 |
| Glyur000234s00015079.1 | PF13041.1 | PPR_2 | 421 | 469 | 4.10E-14 |
| Glyur000234s00015079.1 | PF13041.1 | PPR_2 | 490 | 536 | 1.60E-12 |
| Glyur000234s00015079.1 | PF01535.15 | PPR | 564 | 592 | 6.50E-05 |
| Glyur000234s00015079.1 | PF01535.15 | PPR | 602 | 628 | 0.11 |
| Glyur000234s00015079.2 | PF01535.15 | PPR | 186 | 211 | 0.21 |
| Glyur000234s00015079.2 | PF01535.15 | PPR | 218 | 247 | 0.39 |
| Glyur000234s00015079.2 | PF13041.1 | PPR_2 | 249 | 296 | 1.40E-16 |
| Glyur000234s00015079.2 | PF13041.1 | PPR_2 | 319 | 368 | 6.00E-20 |
| Glyur000234s00015079.2 | PF13041.1 | PPR_2 | 421 | 469 | 3.80E-14 |
| Glyur000234s00015079.2 | PF13041.1 | PPR_2 | 490 | 536 | 1.50E-12 |
| Glyur000234s00015079.2 | PF01535.15 | PPR | 564 | 592 | 6.10E-05 |
| Glyur000234s00015079.2 | PF01535.15 | PPR | 602 | 628 | 0.1 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.346 |
| SRR1783600 | control | 2.583 |
| SRR1783602 | moderate drought stress | 4.525 |
| SRR1811619 | moderate drought stress | 4.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.283 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.582 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.461 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.429 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.500 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.486 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.287 |
| SRR2868004 | Drought Stress (root) | 10.435 |
| SRR2967015 | Control (root) | 8.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.050 |
| SRR9715740 | Leaf | 4.698 |
| SRR9715741 | Leaf | 3.441 |
| SRR9715739 | Root | 0.766 |
| SRR9715742 | Root | 3.815 |
| SRR9715743 | Root | 2.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.902 |
| SRR8749028 | MeJA induced 9h | 2.890 |
| SRR8749029 | MeJA induced 9h | 1.402 |
| SRR8749030 | Uninduced | 0.786 |
| SRR8749031 | Uninduced | 0.318 |
| SRR8749032 | Uninduced | 0.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.759 |
| SRR8400027 | Control - Root | 8.014 |