Gene detail information of Glyur000234s00015075 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18420.1 | 2.00E-74 | Protein prenylyltransferase superfamily protein |
| NR | XP_004504629.1 | 6.88E-140 | PREDICTED: uncharacterized protein LOC101499708 [Cicer arietinum] |
| COG | YP_007113750.1 | 3.00E-19 | Tetratricopeptide TPR_2 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9LS48|SG1_ARATH | 4.00E-112 | protein SLOW GREEN 1, chloroplastic {ECO:0000303|PubMed:24420572} (Precursor) |
| trEMBL | tr|I1KRM4|I1KRM4_SOYBN | 2.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G09550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00234 | 85792 | 86745 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000234s00015075.1 | PF13174.1 | TPR_6 | 159 | 188 | 0.38 |
| Glyur000234s00015075.1 | PF13414.1 | TPR_11 | 235 | 294 | 2.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.315 |
| SRR1783600 | control | 68.152 |
| SRR1783602 | moderate drought stress | 42.473 |
| SRR1811619 | moderate drought stress | 42.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.523 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.169 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.554 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.908 |
| SRR2868004 | Drought Stress (root) | 41.883 |
| SRR2967015 | Control (root) | 36.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.284 |
| SRR9715740 | Leaf | 29.939 |
| SRR9715741 | Leaf | 45.158 |
| SRR9715739 | Root | 54.724 |
| SRR9715742 | Root | 81.169 |
| SRR9715743 | Root | 81.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.248 |
| SRR8749028 | MeJA induced 9h | 38.147 |
| SRR8749029 | MeJA induced 9h | 48.364 |
| SRR8749030 | Uninduced | 26.939 |
| SRR8749031 | Uninduced | 22.151 |
| SRR8749032 | Uninduced | 31.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 72.733 |
| SRR8400027 | Control - Root | 56.695 |