Gene detail information of Glyur000232s00013783 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52240.2 | 4.00E-43 | RHO guanyl-nucleotide exchange factor 11 |
| NR | XP_004486743.1 | 1.63E-58 | PREDICTED: probable dynein light chain-like [Cicer arietinum] |
| Swissprot | tr|Q39580|DYL1_CHLRE | 2.00E-19 | Dynein 8 kDa light chain, flagellar outer arm |
| trEMBL | tr|A0A068TQ27|A0A068TQ27_COFCA | 3.00E-57 | Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98029.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00232 | 240936 | 241625 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000232s00013783.1 | PF01221.13 | Dynein_light | 1 | 90 | 1.60E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.656 |
| SRR1783600 | control | 7.916 |
| SRR1783602 | moderate drought stress | 17.770 |
| SRR1811619 | moderate drought stress | 18.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.627 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.670 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.538 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.578 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.593 |
| SRR2868004 | Drought Stress (root) | 7.521 |
| SRR2967015 | Control (root) | 11.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.437 |
| SRR9715740 | Leaf | 4.276 |
| SRR9715741 | Leaf | 3.259 |
| SRR9715739 | Root | 16.989 |
| SRR9715742 | Root | 2.714 |
| SRR9715743 | Root | 4.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.156 |
| SRR8749028 | MeJA induced 9h | 11.122 |
| SRR8749029 | MeJA induced 9h | 12.353 |
| SRR8749030 | Uninduced | 0.205 |
| SRR8749031 | Uninduced | 0.169 |
| SRR8749032 | Uninduced | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.098 |
| SRR8400027 | Control - Root | 33.695 |