Gene detail

Gene detail information of Glyur000232s00013774

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G66200.1	armadillo repeat only 2
NR	XP_004512138.1	PREDICTED: uncharacterized protein LOC101503266 [Cicer arietinum]
trEMBL	tr\|B7FF14\|B7FF14_MEDTR	Armadillo repeat only protein {ECO:0000313\|EMBL:AES95139.1}

Sequence

Transcript Sequence

>Glyur000232s00013774.1
ATGGGTGACATAGTGAAGCAAATACTGGCAAAGCCNATCCAGCTGGCAGACCAAGTAGCGAAGGCAGCGGACGAGGCTAGTTCCTTCAAGCAAGAATGCGGTGACCTCAAATCCAAAACGGAGAAGCTCTCGGATCTTCTCCGGCAGGCGGCGAGGGCCAGCTCCGACCTTTACGAGCGCCCCACGCGGCGGATCATCGAGGAAACCGAACACGTCCTCGACAGGGCCCTCTCTTTGGTCCTCAAGTGCCGCGCCGCCAACGGACTCATGAAGCGACTCTTCACCATCAACCCCTCTGCCGCTTTCCGCAAGGTCTCCTCCCACCTCGATAACTCCATCGGCGACGTCTCCTGGCTCCTCCGCGTCTCCGCCCCCGCCGGCGACGACCTCGACGGCGGAGGAGAGATCCTCGGCCTCCCACCGATCGCAGCCAACGAGCCCATCCTCTGCTTCATATGGGAGCAGATCGCCATCCTCTACACGGGATCCCCGGGTGACCGCTCCGACGCCGCGGCATCGCTCGTGTCACTCGCACGTGGCAGCGACCGTTACGGGAAGCTCATCATCGAGGAAGGAGGGGTGGGCCCACTCTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGGCAGGAGCACGCAGCCAGAGCCATTGGACTCCTCGGGAAAGACCCCGAGAGCGTTGAGCACATGATCCACGTGGGTGTGTGCTCTGTTTTCGCGAAAATCCTCAAAGAAGGTCCCATGAAAGTGCAAGCCGTTGTTGCTTGGGCTGTGTCTGAACTCGCTGCTAACTACCCCAAATGCCAGGACCTTTTCGCTCAGCACAATATTATAAGGTTTCTTGTTGGACACCTTGCTTTTGAAACCGTTGAGGAGCACAGCAAGTATGCGATTGTCAGCATGAAACCCACGTCGATTCACGCCGTTGTCATGGCCAGCAGTAATAATCCTAATTCTAATAACGCCATCAATAATAATATGAAGAAGGGAAATGAAAATGAAGACCGTGANAAGATGCCGAATCATCCATTGGGCGAAAGGCCACGAAATCTGCATAGAGTGATCACGAGTACCATGGCAATGCACGCTGCCACGAAACAGGGGAATGAAACAAATCAAAATCACAATACTCCNAACGGCAATGGACTTGGTAATGATGGGAAGCAGCAAGGCCATCAACTCCATCATCGTAATCATGATCATAATCATAATCACCAGCGTAACTATTCGCATTCGGGAATTAGTATGAAGGGAAGGGAACTCGAGGAGCCNGAGACTAAGGCCAGCATGAAGGAAATGGCAGCGAGAGCTCTCTGGCACTTGGCCAAGGGGAATGCGCCGATTTGTNGCAGCATCACGGAATCAAGAGCCCTGCTGTGCTTTGCCGTACTCCTTGAGAAAGGACCGGAGGCTNTGCAGTACAATTCTGCCATGGCGGTGATGGAGATCACCGCGGTGGCGGAGAAAGACGCCGAATTGAGGAAATCCGCATTCAACCCAAGCTCTCCTGCCTGCAAAGCAGTTGTTGATCAAGTGCTGAAGATAATTGAGAAAGCGGATTCAGACCTCTTGATTCCTTGCATCAGGGTGATTGGGAATTTGGCAAGGACATTCAGGGCAACAGAGACGAGGATGATTGGTCCCTTGGTGAGACTTCTTGACGAAAGAGAGGCAGAGGTATCCATGGAGGCATCGATTGCCCTCGCGAAATTTGCNTGCACTGAGAACTACCTCCACATGGATCACTCCAAGGCAATTATAAACGCAGGTGGGGCAAAACACTTGATTCAGCTTGTGTATTTTGGAGAACACATGGTTCAGATTCCTGCATTGGTTCTGCTCTCCTACATTGCATTGCATGTGCCAGACAGTGAAGAACTTGCGCAGGCTGCAGCGCTCGGAGTGCTGGAATGGGCGTCCAAGCAATCTTTCATGCAACATGATGAAACCCTNGAGGAATTGTTGCAAGAAGCCAAGAGTAGGTTGGAGCTTTACCAATCTAGAGGTTCAAGAGGATTCCATAAATTACATCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	201914	203947	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.870
SRR1783600	control	0.882
SRR1783602	moderate drought stress	0.616
SRR1811619	moderate drought stress	0.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.341
DRR006520	Root Summer glycyrrhizin high producing strain	19.016
DRR006521	Root Winter glycyrrhizin high producing strain	0.272
DRR006522	Root Winter glycyrrhizin high producing strain	0.268
DRR006523	Root Summer glycyrrhizin low producing strain	24.479
DRR006524	Root Summer glycyrrhizin low producing strain	24.561
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.959

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.439
SRR2868004	Drought Stress (root)	22.087
SRR2967015	Control (root)	24.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.702
SRR9715740	Leaf	30.213
SRR9715741	Leaf	57.251
SRR9715739	Root	11.313
SRR9715742	Root	31.800
SRR9715743	Root	28.500

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.307
SRR8749028	MeJA induced 9h	34.650
SRR8749029	MeJA induced 9h	16.847
SRR8749030	Uninduced	52.032
SRR8749031	Uninduced	19.878
SRR8749032	Uninduced	25.404

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.261
SRR8400027	Control - Root	7.429