Gene detail

Gene detail information of Glyur000232s00013772

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36010.2	1.00E-60	Pathogenesis-related thaumatin superfamily protein
NR	XP_004512140.1	1.99E-100	PREDICTED: thaumatin-like protein 1-like [Cicer arietinum]
Swissprot	tr\|P83332\|TLP1_PRUPE	1.00E-53	Thaumatin-like protein 1 (Precursor)
trEMBL	tr\|I1J8K7\|I1J8K7_SOYBN	1.00E-99	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G37040.1}

Sequence

Transcript Sequence

>Glyur000232s00013772.1
GTAAATTTTCAGTTATGGCTGCTTCAAGTTCAACTCAACTAGTGAGCACCAGTACTCTTGTCACTCTACTTTTCATCCAATTCCAAAAAGGTTCCTATTCAGTAACATTCACAATCGTGAACGAGTGCAGCTACCCAGTTTGGCCGGCCATTTTGTCCGGCGCCGGAACCTCGCTCCCCACCACAGGCTTTTCCCTGCAACCGGGCGAGTCCAACGCCATCCCCGTGCCTGCGTCGTGGTCCGGCCGCCTATGGGGGCGAACCCTCTGCTCCCAGGACTCCACCGGAAAGTTCTCATGCATCACCGGCGACTACGCCACCGCCCANGTAGTGGCCACGCTGGCGAAGCTCACCCTGAACGGCACTGAGGTGCCCAGTTTCTTCGAGGTCAGCCTCGTGAACGGTTTCAACCTCCCGATGACGGTGGAGCCTCGGGGAGGGAACTGCAGTGCTACCGGTTGCGGNTGCACGGTGGACTTGAACGGAGCGTGTCCGGCGGAGTTGAAGGTGATGAGTGGGGNNGAGGTTGTGGCGTGCAAGAGCGCTTGCCAAGCATTCGGGGATCCCCTGTATTGCTGTGTTGGCGCTTACGGTACACCTGAGACATGCAAGCCCAGCGTCTACTCGGGGTTCTTCAAGAGTGCATGCCCTCTCGCTAACGTCGATGGCACCGCCAACAAATTCACCTGTGCTTGTGTCTCTGCTGATTATCTCATCATTTTCTGCCCCACACCGCCCTCCCCAAGTTCCGTCAAGCCGGGTAATTACGAGAAATTATACCCAAGTCCAACGGCGCAGGTCGAAAACCACGGCGGAGGTCACGTGCACGGGTCAGCCAAGTCCAAACATGTCATGGCAGTTGCTCTGGTTGTTGGCTCTGTGGTTTGTGGTGGCCTTTTTTGCAACCTAACGATCTACTACTACAGNAAGAATTGTGGGTGTGGCTTCCACGTGTGGGCTGGAACAAGATTTCCAGCAGGCGTTAACCACCCTATACATGTTGGGCCCTCGGTTAATGCTGCAGAGGATGGGCCCTCTGCTGCTGTTGAAGTTCCAGCTGCCCAAGAGGATTGCTGCCCGACCCGCTGGATCATNGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	178329	179868	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013772.1	PF00314.12	Thaumatin	36	238	1.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.099
SRR1783600	control	0.099
SRR1783602	moderate drought stress	0.275
SRR1811619	moderate drought stress	0.249

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.195
DRR006520	Root Summer glycyrrhizin high producing strain	0.156
DRR006521	Root Winter glycyrrhizin high producing strain	0.163
DRR006522	Root Winter glycyrrhizin high producing strain	0.163
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.718
SRR2868004	Drought Stress (root)	0.264
SRR2967015	Control (root)	3.345

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.931
SRR9715740	Leaf	55.924
SRR9715741	Leaf	10.415
SRR9715739	Root	0.533
SRR9715742	Root	0.071
SRR9715743	Root	0.055

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.143
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.115
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.103

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.789
SRR8400027	Control - Root	0.679