Gene detail information of Glyur000232s00013768 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38660.1 | 1.00E-80 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_004512141.1 | 3.14E-166 | PREDICTED: thaumatin-like protein 1-like [Cicer arietinum] |
| Swissprot | tr|P83332|TLP1_PRUPE | 4.00E-85 | Thaumatin-like protein 1 (Precursor) |
| trEMBL | tr|V7CLW3|V7CLW3_PHAVU | 7.00E-163 | Uncharacterized protein {ECO:0000313|EMBL:ESW29901.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00232 | 151157 | 153200 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000232s00013768.1 | PF00314.12 | Thaumatin | 35 | 241 | 3.50E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.661 |
| SRR1783600 | control | 59.878 |
| SRR1783602 | moderate drought stress | 97.405 |
| SRR1811619 | moderate drought stress | 96.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 132.480 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 131.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.863 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.021 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 119.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 119.584 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.054 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.206 |
| SRR2868004 | Drought Stress (root) | 9.579 |
| SRR2967015 | Control (root) | 14.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.586 |
| SRR9715740 | Leaf | 1.932 |
| SRR9715741 | Leaf | 1.935 |
| SRR9715739 | Root | 45.024 |
| SRR9715742 | Root | 46.977 |
| SRR9715743 | Root | 46.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.178 |
| SRR8749028 | MeJA induced 9h | 1.065 |
| SRR8749029 | MeJA induced 9h | 0.823 |
| SRR8749030 | Uninduced | 0.246 |
| SRR8749031 | Uninduced | 0.118 |
| SRR8749032 | Uninduced | 0.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.349 |
| SRR8400027 | Control - Root | 52.198 |