Gene detail

Gene detail information of Glyur000232s00013761.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17820.1	0	histidine kinase 1
NR	XP_006590729.1	0	PREDICTED: histidine kinase 1-like isoform X2 [Glycine max]
COG	YP_645392.1	1.00E-35	multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q9SXL4\|AHK1_ARATH	0	Histidine kinase 1
trEMBL	tr\|I1LI26\|I1LI26_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G08310.1}

Sequence

Transcript Sequence

>Glyur000232s00013761.1
GTCATGCTAGCCATATTGATAGGGCTGCTTACTATACTGACATGGCATTTCACAAAGATTTATACGGCAAAGTCACTGAATAGCTTGGCATATGGTCTGCGTTATGANCTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAACTCCACTTCTGAAATCACAACGGCTCAGGTCAAGTTGTCTGAGTATGTCATCAGACGCCACAGCAACCCTGCCTCTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCACTNTTTGCTAGTAGGAAAGCTCTCAACTCAATAACCATCAANTACAAGAATGGATTTGTNCAAGCATTCCATAGAGACTTGAAGGATAACAACACATTNTACATCTACTCTGATCTTTCAAATTACTCCATGGTTGCAAGCAGCTCCAACGTGGTCAATTCCCTTTCAACTCATCAAGCTTGGGATGACAAAGCCATTCATGGTAACTTCTCTGCGATTTGGTACCGCGAACCGCTTGATCCTGTCACTGGTAAGAAAACTGGGAAAGCTAAGCAAATTGCACCTGAGGACTTGATCAACATAGCTGGCCTTTCCCAAGTNCCTGATGGTGTGGCTACATGGCATGTTGCAGTGAGCAAGTTCACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCCAATAAAAGCATCATGGCTGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGACAGCTAATGAGGGAACTGGTTGAGATGCATAGTGGTCATATGTATTTGACTTCCCAAGAGGGTTANTTGCTTGCAACTTCCACAAGTGCACCTTTATTGACAAATTCAACAAAGCCTCTCAAGCTTAAGATGGCTGTTGANTGTGAAGATGATGTGATAAGACTTGGAGCTGAGTGGNTACAGAGAACTTATGGGAAAAATTTCCCTTCAAGCCATGAGGTTCATGTAGAGAATGCCAAACTAGGCCATGANCAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATAATCATACCAAGGAAGTATATCATGGGGCAGGTAGATGAGAGAGCCTTCAAAACATTAGTTATTCTGATATCTGCGTCGTTATGTATTTTAGTCATTGGATGTGTTTGCATTCTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGNCANTTCCTTGCAAACATGAGTCATGAACTAAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTGGAATCCGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGNCTTGTAGACATGTTTTCTGTTCAACGCATTAACCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCCAGGGTAGTTCAAGTATTTGCAAATTTGATCAACAATTCAATTAAGTTTACNACATCGGGTCATATTATTCTGCGAGGATGGTGTGANAACCCAAATTCTTGCAGAGATGTTCCAAATTTTCCTCTTGACCANAAGAAATCACGGGGTTTACATAAGAGCAGAGAGAGGCCAAATGCAAATCACACAAAGAGAACATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGGAACTTGGTTAATAAGATGGGTGGAGACATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACATTAATGCGATTATGCTTGCTTCTTAGTGCACCCATGGATGTCACAGAACAACATTGTTCAGTTGATTTGACAGACAGTTGCTTAGTGGTACTGCTTGCACTGCACGGCAACATGGGTCGATTGATAACATCCAAGTGGTTACAGAAAAACGGGGTGTGCACAATGGAAGNATCTGAATGGAATGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTCCATGATAATGACTTTGATGCACACTATCCAATAAATGAGGGACTGAAGTCTAAGCTACTCAGCTTAAAAGATATGAGGAACCCNGTTTTTGTCATTGTTGTTGACATTGGTTTACTTGACTTGAGCACAGACATATGGAAGGAACAACTTAACTTCCTTCACAAATACTTTGGGAGAGCAAAGTTTGTATGGATGCTAAATCATGACACCTCCAATAACATAAAGATGGAGCTTCGTAGGAAAGGNCATGTACTAATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCACATTTTGGAAGCTGTCATAAAGGAGAGAAATCTTGAACAACAAAAGAAAAACATGAATGCTCCAAGGACCACAATGAAAGAGGGTGATTTGCATGAGTATCTTGAGATTGATTCCANTCATTTTGATTCTGCTAGCTCTGATGATTCTGACATATCTGAAATGGGTNGTTCTAATCCTGTTAGTGNCANTGGNGGNAAACCATATCAGATGAATAACTGCTTAGCTAGNTTAACCAATGAAAATGAAAATTTGGAAGAAATTTTGAGGAAAGAAGAATCTTGTGAGAGTAGCCCAAAATCCAATTATGCCACTGAAGACACACAACCTAAAACACTGTCCAGTACTAAAGAACCATCCTCTCCAACAGAAGCTCAAGATGAAGATTCTGAATGTGAGGGAACAAATAGGGTCACCAGCTCAAGTAATAAAGCAGTAAATGGAATGAAATCTCTTGAGGGCCTAAGGATTTTGCTTGCAGAAGACACACCAGTACTTCAAAGGGTTGCAACTATAATGCTTGAAAAAATGGGAGCCACTGTAGTTGCTGTAGGTGATGGACAACANGCAGTNGATGCTCTCAATTTCATGGTAGGTGCTGAAGATTGTAGAAGGGAGTCTCTCCAGAAGGAAAGAAACACAAGAACCCAAACAGAGATTTTGACTTGCCATCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATACGAGGCAACAAAAGCAATAAGGAAATCAGAGGGAACAGGGTTTCACATCCCCATTGTTGCTCTCACAGCACATGCAATGTCTTGTGATGAAGCCAAATGCCTGCAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGTTGATGGTGTCCACCATTCTTTCACTCACNAAAAGAACATCTTGACTTCTCTCTCTTTAAGCCCAAGCAAACAGAGGAGCCTAGATATGTACAGAAGTTCACCACATGTTAACATCGGAAATTATAGCTTGACATATATGCATGTATGTATGTATGTATCTAAAGTGTAGTTCAATTTTCCTGACTGAACTCACTCGTACAAGTAAACGGCTATAATGTTTTTTTTTTCCCGTGTGCACAAGACTGCACTTTACTGAAGGAAAAACTATTATGTTTTACCCAATTACCAACTTTTATAGTTCTATTTACATACTGCCTAATGAAAATAAATGAA

Protein Sequence

>Glyur000232s00013761.1
VMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYXLLQRPILRMWNILNSTSEITTAQVKLSEYVIRRHSNPASQAEQVELYEAMRAVTWALFASRKALNSITIXYKNGFVQAFHRDLKDNNTXYIYSDLSNYSMVASSSNVVNSLSTHQAWDDKAIHGNFSAIWYREPLDPVTGKKTGKAKQIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGXLLATSTSAPLLTNSTKPLKLKMAVXCEDDVIRLGAEWXQRTYGKNFPSSHEVHVENAKLGHXQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKXXFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVESGKLVLEDAEFDLGRELEGLVDMFSVQRINHNVETVLDLSDDMPKVVRGDSARVVQVFANLINNSIKFTTSGHIILRGWCXNPNSCRDVPNFPLDXKKSRGLHKSRERPNANHTKRTSMRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGPGTLMRLCLLLSAPMDVTEQHCSVDLTDSCLVVLLALHGNMGRLITSKWLQKNGVCTMEXSEWNGLTQILRELFHARSSVHDNDFDAHYPINEGLKSKLLSLKDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTSNNIKMELRRKGHVLMVNKPLYKAKMIHILEAVIKERNLEQQKKNMNAPRTTMKEGDLHEYLEIDSXHFDSASSDDSDISEMGXSNPVSXXGGKPYQMNNCLAXLTNENENLEEILRKEESCESSPKSNYATEDTQPKTLSSTKEPSSPTEAQDEDSECEGTNRVTSSSNKAVNGMKSLEGLRILLAEDTPVLQRVATIMLEKMGATVVAVGDGQXAVDALNFMVGAEDCRRESLQKERNTRTQTEILTCHPYDLILMDCQMPKMDGYEATKAIRKSEGTGFHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKLMVSTILSLTKRTS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	102956	109863	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013761.1	PF00512.20	HisKA	422	503	1.50E-08
Glyur000232s00013761.1	PF02518.21	HATPase_c	511	661	1.90E-26
Glyur000232s00013761.1	PF00072.19	Response_reg	984	1123	1.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.672
SRR1783600	control	4.641
SRR1783602	moderate drought stress	6.162
SRR1811619	moderate drought stress	6.020

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.413
DRR006520	Root Summer glycyrrhizin high producing strain	8.302
DRR006521	Root Winter glycyrrhizin high producing strain	0.541
DRR006522	Root Winter glycyrrhizin high producing strain	0.506
DRR006523	Root Summer glycyrrhizin low producing strain	12.643
DRR006524	Root Summer glycyrrhizin low producing strain	11.994
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.176
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.173

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.066
SRR2868004	Drought Stress (root)	72.673
SRR2967015	Control (root)	59.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.096
SRR9715740	Leaf	0.219
SRR9715741	Leaf	0.035
SRR9715739	Root	0.225
SRR9715742	Root	4.761
SRR9715743	Root	4.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.116
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.034
SRR8749031	Uninduced	0.136
SRR8749032	Uninduced	0.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.966
SRR8400027	Control - Root	4.932