Gene detail

Gene detail information of Glyur000232s00013760

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35000.1	5.00E-112	ascorbate peroxidase 3
NR	XP_003537644.1	1.53E-172	PREDICTED: L-ascorbate peroxidase 3, peroxisomal [Glycine max]
COG	YP_002315559.1	5.00E-19	catalase [Anoxybacillus flavithermus WK1]
Swissprot	tr\|Q42564\|APX3_ARATH	2.00E-139	L-ascorbate peroxidase 3, peroxisomal (Precursor)
trEMBL	tr\|G7JXJ2\|G7JXJ2_MEDTR	1.00E-171	L-ascorbate peroxidase {ECO:0000313\|EMBL:AES95163.2}

Sequence

Transcript Sequence

>Glyur000232s00013760.1
CNCCTTTCAAAATTCAAACGCAAAAGCCTCTCAGTACTCTACTCCCCTCCCTGCAATAATCCATACCTTCCTCTCCCACAAACCAAATCGTTGTTGCACAAGCAGCTGCAAATTAAATTAACTCTTGCAATGGCNAAACCCATAGTTGACCCCGAATATCTCAAGGAAATCGAGAAGGCTCGTCGTGACCTTCGCGCTCTTATCTCCAACAAAAAATGCGCTCCTCTCATGCTTCGTTTAGCGTGGCACGACGCTGGTACCTACGATGCTAAATCCAGAACAGGAGGCCCCAATGGTTCCATCAGGAATGAACAAGAGTTGAATCACGCTGCAAACATGGGGTTGAAAACTGCAGTTGAGTTGTGTGAGGAAGTGAAGGTCAAGCACCCAAAAGTTTCATATGCGGACCTTTACCAGCTAGCTGGTGTTGTGGCAGTGGAAGTCACTGGGGGTCCAACAATTGACTTTGTTCCCGGGAGGAAGGATTCATTGGAATCTCCAAAAGAAGGGCGCCTTCCTGATGCCAAACAAGGGGCATCGCATTTAAGAGAGATTTTTTNTCGCATGGGTCTAAATGATAGAGACATCGTGGCTCTATCTGGAGGCCACACTTTGGGTAAGGCACATAAAGAACGCTCGGACTTTGAAGGTCAATGGACAAGAGACCCTTTGAAGTTTGATAACTCCTATTTCGTAGTCANCAGGGAACTATTGAAGGCGGAATCAAAAGACTTGTTGAAGCTTCCCACTGACAAGGCTCTAATTGAAGATCCTGCGTTCCGCACGTATGTTGAACTGTATGCCAAGGATGAAGATGCATTTTTCAGAGACTANGCAAGCTCACACAAGAAACTCTCAGAGCTAGGCTTCCTCAATCACAATAATCGTTCCATATTGGCCAAGGGAGTTATCGGAATCGTTGTTGCCACCACCGTGGTGATCCTGGGTTACTTACTTGAACTCAACAGAAAAACCACCAATTGAAAGATTCTGTTATTATTCTTATAATGTTTATAGTCCTCGAAACTGGACGCTAGCTTGGCTTATTTTCTTCGTTCCCAAATAAAAACAAACAGATCATACATGCATGATTTGTGAAGTTCAGNAGCTTTCATATGCTACTTAAATTTGATGTACATTTGTTATTCTATTTCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	99687	101844	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00434	E1.11.1.11	EC:1.11.1.11	Ascorbate and aldarate metabolism	map00053
			Glutathione metabolism	map00480

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013760.1	PF00141.18	peroxidase	61	270	3.90E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.333
SRR1783600	control	6.349
SRR1783602	moderate drought stress	6.070
SRR1811619	moderate drought stress	6.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.736
DRR006520	Root Summer glycyrrhizin high producing strain	12.717
DRR006521	Root Winter glycyrrhizin high producing strain	0.097
DRR006522	Root Winter glycyrrhizin high producing strain	0.092
DRR006523	Root Summer glycyrrhizin low producing strain	20.137
DRR006524	Root Summer glycyrrhizin low producing strain	19.882
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.025
SRR2868004	Drought Stress (root)	18.751
SRR2967015	Control (root)	15.316

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.668
SRR9715740	Leaf	1.029
SRR9715741	Leaf	2.483
SRR9715739	Root	1.544
SRR9715742	Root	13.558
SRR9715743	Root	13.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.009
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.065
SRR8749031	Uninduced	0.199
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.536
SRR8400027	Control - Root	10.895