Gene detail

Gene detail information of Glyur000232s00013757.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66120.2	2.00E-180	3-dehydroquinate synthase, putative
NR	XP_004512152.1	0	PREDICTED: 3-dehydroquinate synthase-like [Cicer arietinum]
COG	YP_392398.1	2.00E-155	3-dehydroquinate synthase [Thiomicrospira crunogena XCL-2]
Swissprot	tr\|U3KRF2\|DHQS_ACTCH	0	3-dehydroquinate synthase, chloroplastic (Precursor)
trEMBL	tr\|G7JXJ9\|G7JXJ9_MEDTR	0	3-dehydroquinate synthase {ECO:0000313\|EMBL:AES95170.1}

Sequence

Transcript Sequence

>Glyur000232s00013757.1
GAAAAAATGTATTAAAAGAGTAGATACACACACACAATGACTCAATTATGATTATTTTACTACTTAAAATCAGTTGCCTCACTCACCTAACCCCACTCTGTCCTTGGTCGTTCCCCGCCTCCTGTTCAACAAAGTTAGCATATCATGTTCTTCTTCAATCGTTGTTCATTCACCAACCACCAAACCACACCCTCGCCCTCACCGTNCTCGTCTCGTTCCAATGGCTTCCACACCCACCCATTCCTCTCTTTCTCTCTCACTCAAACAAGCAGCAACTCCAATCCCAAAACCCACTCACCTCTCCTCCCTTCAAAATCCTAAATTGCTGCCTCCCCACTCCCTATTCTGCCACCCCACCAACCGTTTTCGCTTGAACCCAAAGTGGGCCTCTGTTTCGAGATCCTTGAGCTCACGGGTATGCGCCACTTCCTCTAAAGTCATGGATCCCTTTGCCGCAAAAACCGAACCTGCGATTCCCACCATTGTTGACGTCGATTTGGGTAATCGGAGCTACCCCATTTATATCGGATCCGGGTTGCTTAATCAACCCGAACTTCTCCAGAAGCATGTTCATGGAAAGAGGGTCCTCGTTGTCACTAACAAAACGGTTGCACCACTGTATCTAGACAAGGTTGTTGATGCTTTAACAACGGGAAACCCGAATGTTTCTGTCGAGAGTGTAATTTTACCAGATGGTGAGCAGTACAAGGACATGGATACTCTTATGAAAGTCTTTGACAAGGCCATTGAGTCGCGGTTGGACCGGCGGTGTACGTTTGTTGCCCTTGGAGGCGGTGTGATTGGCGACATGTGTGGCTTTGCTGCCGCCTCCTTCCTGCGTGGTGTTAATTTTATTCAGATTCCAACCACTGTTATGGCACAGGTTGATTCTTCAGTTGGTGGCAAAACCGGGATAAACCATCGCCTTGGAAAGAACCTTATCGGTGCATTTTACCAACCTCAGTGTGTGCTTATAGACACAGACACATTAAATACATTACCAGAGAGGGAACTAGCATCAGGGTTTGCAGAGGTTATAAAGTATGGGCTCATTAGGGATGCAGAATTTTTTGAGTGGCAAGAGAAAAATATGCAGGCATTGATGGCTAGAGATCCCAGTGCACTGGCATATGCTATAAAGCGATCGTGTGAAAACAAGGCTGAGGTTGTCTCCTTGGATGAGAAGGAAAGTGGACTCAGGGCAACGTTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACTGGGGTTGGCTATGGGCAGTGGCTTCATGGAGAGGCTGTTGCAGCCGGCATGGTAATGGCTGTTGACATGTCNTATCGCCTAGGTTGGATTGATGAGTCTCTTGTGAAGCGAGTTAGCGACATTTTAAAACAGGCCAAGTTACCTATTGTGCCTGCTGAATGCATGACTGTGGACATGTTTAAATCTGTCATGGCGGTTGATAAGAAGGTAGCAGATGGATTGCTAAGACTTATCCTTCTAAAGGGTCCTCTAGGCAATTGCGTTTTCACAGGGGATTATGACAGAAAGGCACTAGATGATACACTTCGTGCATTCTGTAAATCCTGATCTTTGGGCTTGATGTTTCTATTGCAGCTTTTATGCAATTCTTTGTAATTTTTAGTGAGTGCTTGTATGTTGTGATAACCTCACTTGTATTATTCCTGTGTACTTGGGATGCCACTTNCGGTCCCCGTTATTATATAGGCAAGAGTCTATTACAAAGTTGTATTATTAGAAGTTGAGGCATGACCAATAATGATTTGAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	77599	81014	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01735	aroB	EC:4.2.3.4	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process
GO:0009073 aromatic amino acid family biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0003856 3-dehydroquinate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013757.1	PF01761.15	DHQ_synthase	154	412	1.70E-105

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.186
SRR1783600	control	63.335
SRR1783602	moderate drought stress	47.407
SRR1811619	moderate drought stress	47.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.426
DRR006520	Root Summer glycyrrhizin high producing strain	60.727
DRR006521	Root Winter glycyrrhizin high producing strain	19.171
DRR006522	Root Winter glycyrrhizin high producing strain	18.817
DRR006523	Root Summer glycyrrhizin low producing strain	43.730
DRR006524	Root Summer glycyrrhizin low producing strain	43.758
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.305

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	112.750
SRR2868004	Drought Stress (root)	101.899
SRR2967015	Control (root)	88.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.953
SRR9715740	Leaf	64.675
SRR9715741	Leaf	57.662
SRR9715739	Root	58.580
SRR9715742	Root	74.932
SRR9715743	Root	71.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.734
SRR8749028	MeJA induced 9h	41.208
SRR8749029	MeJA induced 9h	22.585
SRR8749030	Uninduced	35.782
SRR8749031	Uninduced	20.432
SRR8749032	Uninduced	16.114

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	97.911
SRR8400027	Control - Root	97.972