Gene detail

Gene detail information of Glyur000232s00013754

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51300.1	1.00E-30	RHO-related protein from plants 1
NR	KHN36014.1	2.56E-37	Rac-like GTP-binding protein RHO1 [Glycine soja]
COG	YP_003319433.1	4.00E-11	small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|Q35638\|RHO1_PEA	6.00E-39	Rac-like GTP-binding protein RHO1 (Precursor)
trEMBL	tr\|C6TCP3\|C6TCP3_SOYBN	1.00E-37	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G36880.3}

Sequence

Transcript Sequence

>Glyur000232s00013754.1
CATTCTTCTCTTTCTTTGTTTTTCCATCTCCGTCCCGTTACGCTTAATTCCAATTCCTCCCAAAGGGTTAGGGTTTCCTCATTTCTCCCATTTTCACTTCCTTTCCCTCCCAAAATAACATTCCCTCGTTTTTCCCTCGCAATCAATCTCTCTCTCTGCATTTTCGCAATTAGGATGTGTAATTGAAGCAGAAGCAGCTGAAGGAGGAGGAGAAGTTGGAGGGGGCGTGTGATTGGGTCCTCAGGTGAAGATCTGAGGCTTTCGTCGTCGTGTTTTTTTTTCCCCTTTCTTTCTTCGTAGTTGAAAAGATGAGCGCTTCTCGGTTCATAAAGTGCGTCACTGTTGGGGATGGAGCTGTGGGCAAAACGTGCTTGCTAATTTCCTACACCAGCAACACCTTCCCCACGGATTACGTNCCGACCGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGAAGTATTGTTAATCTGGGCTTGTGGGACACTGCTGGTAATGTTGCATGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCCAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATAGACCATCCTGGTGCCGTTCCCATTACCACAGCTCAGGGAGAAGAGCTGAGGAAGCTGATTAATGCACCCGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGACGCAGCCATAAGAGTTGTTCTTCAACCACCTAAGCAGAAGAAAAAGAAGAATAAAGCACAAAAGGCCTGTTCAATATTGTGATTCACTAGGTGTAAACATTTGACTGCCCTTTGTTCTACCTGTATTCNTCCTCCCCCTTCTTTCTTTTCATCATTTCTTTGCTATTGAAGAAGTTGGAGAGTCTATGTGGGTGTTCGTCAGACAAATACTCTAGATCTCCTTGAAGCATAAGGTGGTTTAATGCTTTGCTTTCTTTGAATTATTGTCAACTCTAATAGTCAAATTTGCATTCCTTGGTTNCCATCTTTTTTCTTATCACTTCCGTTTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00232	67700	70464	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000232s00013754.1	PF00071.17	Ras	8	63	7.30E-19
Glyur000232s00013754.2	PF00071.17	Ras	8	178	4.80E-51
Glyur000232s00013754.3	PF00071.17	Ras	8	63	7.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.284
SRR1783600	control	36.038
SRR1783602	moderate drought stress	42.065
SRR1811619	moderate drought stress	41.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.959
DRR006520	Root Summer glycyrrhizin high producing strain	32.461
DRR006521	Root Winter glycyrrhizin high producing strain	21.104
DRR006522	Root Winter glycyrrhizin high producing strain	20.509
DRR006523	Root Summer glycyrrhizin low producing strain	35.137
DRR006524	Root Summer glycyrrhizin low producing strain	36.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.794

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	90.571
SRR2868004	Drought Stress (root)	87.019
SRR2967015	Control (root)	86.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.334
SRR9715740	Leaf	56.667
SRR9715741	Leaf	59.775
SRR9715739	Root	53.578
SRR9715742	Root	36.803
SRR9715743	Root	40.453

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.821
SRR8749028	MeJA induced 9h	30.390
SRR8749029	MeJA induced 9h	29.908
SRR8749030	Uninduced	16.983
SRR8749031	Uninduced	10.133
SRR8749032	Uninduced	20.622

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	80.205
SRR8400027	Control - Root	87.363