Gene detail information of Glyur000232s00013752 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66110.1 | 5.00E-62 | Heavy metal transport/detoxification superfamily protein |
| NR | XP_003612216.1 | 2.48E-97 | Atfp6-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SZN7|HIP26_ARATH | 3.00E-71 | Heavy metal-associated isoprenylated plant protein 26 (Precursor) |
| trEMBL | tr|G7JXK3|G7JXK3_MEDTR | 9.00E-98 | Heavy metal transport/detoxification superfamily protein {ECO:0000313|EMBL:AES95174.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00232 | 54175 | 55229 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000232s00013752.1 | PF00403.21 | HMA | 33 | 88 | 2.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.462 |
| SRR1783600 | control | 1.585 |
| SRR1783602 | moderate drought stress | 6.320 |
| SRR1811619 | moderate drought stress | 5.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.591 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.645 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.920 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.940 |
| SRR2868004 | Drought Stress (root) | 1.463 |
| SRR2967015 | Control (root) | 0.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.041 |
| SRR9715740 | Leaf | 0.498 |
| SRR9715741 | Leaf | 0.248 |
| SRR9715739 | Root | 0.877 |
| SRR9715742 | Root | 0.327 |
| SRR9715743 | Root | 0.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.889 |
| SRR8749028 | MeJA induced 9h | 1.121 |
| SRR8749029 | MeJA induced 9h | 0.308 |
| SRR8749030 | Uninduced | 0.254 |
| SRR8749031 | Uninduced | 0.254 |
| SRR8749032 | Uninduced | 0.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.858 |
| SRR8400027 | Control - Root | 10.337 |