Gene detail information of Glyur000232s00013751 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35920.3 | 1.00E-134 | PLAC8 family protein |
| NR | XP_006572883.1 | 0 | PREDICTED: uncharacterized protein LOC100811369 isoform X1 [Glycine max] |
| Swissprot | tr|Q8L7E9|MCAC1_ARATH | 2.00E-178 | Protein MID1-COMPLEMENTING ACTIVITY 1 |
| trEMBL | tr|I1J8I6|I1J8I6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G36860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00232 | 41596 | 46930 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000232s00013751.1 | PF04749.12 | PLAC8 | 295 | 368 | 8.70E-07 |
| Glyur000232s00013751.2 | PF04749.12 | PLAC8 | 295 | 393 | 1.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 76.373 |
| SRR1783600 | control | 76.053 |
| SRR1783602 | moderate drought stress | 46.298 |
| SRR1811619 | moderate drought stress | 46.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 88.309 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 87.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.001 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.082 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.391 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.056 |
| SRR2868004 | Drought Stress (root) | 41.103 |
| SRR2967015 | Control (root) | 37.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.403 |
| SRR9715740 | Leaf | 23.983 |
| SRR9715741 | Leaf | 20.411 |
| SRR9715739 | Root | 9.012 |
| SRR9715742 | Root | 26.818 |
| SRR9715743 | Root | 25.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.761 |
| SRR8749028 | MeJA induced 9h | 41.111 |
| SRR8749029 | MeJA induced 9h | 47.567 |
| SRR8749030 | Uninduced | 12.279 |
| SRR8749031 | Uninduced | 7.855 |
| SRR8749032 | Uninduced | 19.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 91.956 |
| SRR8400027 | Control - Root | 97.628 |