Gene detail information of Glyur000232s00013745.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45290.1 | 3.00E-13 | RING/U-box superfamily protein |
| NR | XP_004512170.1 | 1.79E-63 | PREDICTED: E3 ubiquitin-protein ligase ZNRF3-like [Cicer arietinum] |
| Swissprot | tr|Q9M2S6|SDIR1_ARATH | 3.00E-12 | E3 ubiquitin-protein ligase SDIR1 |
| trEMBL | tr|V7CIC3|V7CIC3_PHAVU | 6.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:ESW29874.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00232 | 17691 | 18104 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000232s00013745.1 | PF13639.1 | zf-RING_2 | 61 | 104 | 3.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.441 |
| SRR1783600 | control | 0.438 |
| SRR1783602 | moderate drought stress | 0.355 |
| SRR1811619 | moderate drought stress | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.834 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.808 |
| SRR2868004 | Drought Stress (root) | 4.010 |
| SRR2967015 | Control (root) | 3.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.717 |
| SRR9715740 | Leaf | 0.304 |
| SRR9715741 | Leaf | 1.293 |
| SRR9715739 | Root | 0.471 |
| SRR9715742 | Root | 1.499 |
| SRR9715743 | Root | 3.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.042 |
| SRR8749029 | MeJA induced 9h | 0.147 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.872 |
| SRR8400027 | Control - Root | 3.808 |