Gene detail

Gene detail information of Glyur000231s00022077.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18700.1	0	trehalose phosphatase/synthase 11
NR	XP_007154820.1	0	hypothetical protein PHAVU_003G150400g [Phaseolus vulgaris]
COG	YP_006545085.1	4.00E-119	alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9ZV48\|TPS11_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
trEMBL	tr\|V7C9K3\|V7C9K3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26814.1}

Sequence

Transcript Sequence

>Glyur000231s00022077.1
CACTTGGTTTCGTTCTTATCCTTACACACCCACACCAGTGTCGTGGTTTTCTTGCAGACAAAAACGCCACCCCCACGCTCTTCTCTTCTCTTCTATTATGGAATGTGTATCAGTATCTTGGATTTCCATTACTCAAAGATTTATCTTCCTCTGCAACACCCACCTATAATACCATCACCCCCCCCCTCCCTTTTTCCTCTCCACTCACACAAACATAAAAAGACTCCATCTTTCACCTTTTCTCCCTCTCAAAACCAAAATAAAAATAAAAATAAATAAATAAAGGNTTTGATTTTTCATTTTTCATTTGTTTTCGTTGGATAATGCTCTCGAGATCTTGCCTGGGGCTATTGAATCTGGTATCGGTGGATGATTACCAAGCGCTGAGTCGAGTCCCGAGCGTGATGACGGTGGCCGGAGATGCATCGGAGTCGGAGCGTTTCGATTCGGGATCGGAGGAGGCGGTTTCTCCGGTGTCGCGAGAACGGAGGATCATCGTGGCGAACCAGTTGCCGATAAAGGCTTCCCGTGACGGAAAAAAGTGGCGGTTCGAATGGGACAGGGACAGCCTCGTGCTGCAGCTGAAAGACGGTTTCCCCCACGGCGTTGAGGTTCTCTACGTCGGTTCGTTAAAAGCAGAGATCGAAGCGTATGAACAAGAAGAAGTGGCCCAGGTTCTGTTAGAAAAGTTCCGTTGCGTCCCAACGTTTCTCCCAACGGAGGTTCACAACAGATTCTACCACGGTTTCTGCAAGCATTACCTGTGGCCCCTTTTCCACTACATGCTACCCATGTCGCCGAGTCAGGGTGCCCGGTTCGACCGGTCGCAGTATCAGNCCTACGTTCTCGCGAACAAGATCTTCGCCGACAAGGTAACCGAGGTGATCAACCCAGACGAGGATTACGTGTGGGTCCACGACTACCACCTCATGATCCTCCCAACGTTCCTCCGTAAGCGTTTCCACCGCGTGAAGCTTGGGTTCTTCCTCCACAACACGTTCCCCACGTCGGAAATCTACAGGACCATACCCGTACGCGAGGACATCCTCAGGGCGTTTTTGAACTGNGACCTTATTGGGTTCCACACCTTCGATTACGCTCGGCATTTCTTGTCCTGTTGTAGCAGGATGTTGGGTTTGGATTACGAGTCCAAGAGGGGTTACATTGGACTCGATTACTACGGACGAACCGTCACCGTCAAGATCTTACCCGCGGGGATCCACATGGGACTCCTCGAGTCGGTGTTGTCGTTGCCCCACACCGCTTCACGGGTCAGGGAATTAAAAGAGCAGTTTCACGGCAAGGTTGTGATTCTTGGGGTTGATGACATGGACCTGTTTAAAGGTATTNGCCTTAAATTCTTGGCATTGGGTCAGCTTCTGGATGAGCATGAAGATTTAAGGGGTCGTGTTGTGTTGGTTCAGATTCTGAACGCTGCACGGAGCAGAGGGAAGGACATTCAGGATGTGAAGAGCGAGAGCGAGGCTATTGCAAAAGAGATCAACGACAAGTATGGGAAACCGGGGTTTTACCAGCCAATTGTTTGCATAAACGGCCCCGTTTCGACTCAGGAGAAGGCTGCGTACTATGCAATATCGGAGTGCTGCGTTGTTAGTGCTGTGAGGGATGGGTTGAATTTGGTGCCGTATGAGTACACTGTTTGCAGGCAGGGGAGTGACGCGTTGGACAAGGCACTTGAAGAAGTAGAAGAAGAAGAAGAGGATGGGGGCGATGCGAAGAAGAAGCCCAAACAGAGCGTTATCATTGTTTCTGAATTCATTGGGTGTTCTCCTTCGCTGAGCGGAGCAATTCGGGTGAACCCGTGGAACATTGATGATGTATCTGAGGCAATGAACTCTGCCATCACAATGCCGGAGGCAGAGAAGCATCTTCGACACGAGAAGCACTACAAGTACATAAGCTCTCATGACGTGGCGTATTGGGCTAGGAGTTTTGATCAGGATTTGGAGAGGGCCTGTAGGGAGCATTACCTCAAGAGGTGTTGGGGTGTTGGTTTGGGACTCGGGTTCAGAGTCGTTGCCTTGGATCCTACGTTTAGGAAGCTTTGTGNGGATAGCATTGTCTCTGCTTACAGAGACACGAGGAGTAGTAGGTTGATCGTTTTGGACTATGATGGCACCATGATGCCACAGGCCTCAATAGACAAGAATCCCAGCANTGAAGTGATTTCTGTGTTGAATTGTTTATGCAGTGATCCCAGAAATATAGTCTTCATTGTGAGTGGCAGGGATAGGAATTGTTTGAGCAAGTGGTTCTCTCCCTGTGACAAGCTGGGTCTCTCTGCTGAGCATGGTTACTTCACTAGGTGGAGTAAGGATTCTCCTTGGGAGACACGCGGGTTGGCGACAGACTTTGATTGGAAAATGATTGTAGAACCTGTGATGGCGCTTTACACAGAAGCAACGGATGGTTCCTTCATTGAACAAAAGGAAAGCGCAATGGTTTGGCACCATCAAGAAGCGGATCCTCATTTTGGGTCATGCCAGGCGAAAGAGCTTCTTGATCACCTCGAGAATGTGTTGGCTAATGAGCCCGTAGTGGTTAAAAGGGGACAACATATTGTTGAAGTTAAGCCACAGGGTGTGAGCAAAGGCATAGTGGTGGAAGACCTCATCTCAACCATGCGAAAGGAGGGGAAGTCAATAGATTTTCTGCTATGCATAGGAGATGATCGATCAGATGAGGACATGTTTGAAAGCATTGCTCNTTCGGTTTCAAATCCCTCTCTGCCAACCATATCACAAGTGTTTGCATGCACTGTTGGTCAGAAACCAAGTATGGCTAAATACTATTTGGAAGATACCGGCGAAGTTATCAAATTGCTAGAAGGACTTGCCACCGCATCATCATCACCACCAACNCCAACACCTACGCTTACAACTTTTCAGGAATTGCAAGGAATTACACTGTAGAAACCGATACAGAAAACAATCTTGTACAGAAATGATACTTACTTTTTATAGGTTGATGATTCGAGAGGAGGAGGAGGAGGAAAAAAAAGGGTCAATACTTTAGAAATTTACAGATTAGCTTATTCATGTTCTTCACATAACTTGCACCAGCAAAATTTCTTTTTGTATTATGACAAGGAATATTAAGTTTTCTGCACAGTACAATGAAAACGTGCCTAGCAGCAATCTTTTAGGAGTATGATGATGATGATGATGAGGTTTCATTTCAGTAAACAACAAAGATTATTGATAATGTTCAGAAATCAAAAAGGGTAGGACTTTAGGTGGAATATGTCCTGGAACTGGCTGTCAATTACTCAATTTTATGAATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00231	173559	177086	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000231s00022077.1	PF00982.16	Glyco_transf_20	55	550	9.30E-170
Glyur000231s00022077.1	PF02358.11	Trehalose_PPase	601	833	6.70E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.850
SRR1783600	control	2.907
SRR1783602	moderate drought stress	8.810
SRR1811619	moderate drought stress	8.632

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.749
DRR006520	Root Summer glycyrrhizin high producing strain	9.230
DRR006521	Root Winter glycyrrhizin high producing strain	61.129
DRR006522	Root Winter glycyrrhizin high producing strain	59.517
DRR006523	Root Summer glycyrrhizin low producing strain	17.584
DRR006524	Root Summer glycyrrhizin low producing strain	17.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.066
SRR2868004	Drought Stress (root)	69.939
SRR2967015	Control (root)	127.824

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.674
SRR9715740	Leaf	44.487
SRR9715741	Leaf	98.845
SRR9715739	Root	11.518
SRR9715742	Root	42.333
SRR9715743	Root	36.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	125.167
SRR8749028	MeJA induced 9h	392.514
SRR8749029	MeJA induced 9h	181.612
SRR8749030	Uninduced	153.767
SRR8749031	Uninduced	394.153
SRR8749032	Uninduced	252.858

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.604
SRR8400027	Control - Root	14.013