Gene detail

Gene detail information of Glyur000231s00022063.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57660.1	5.00E-88	CONSTANS-like 5
NR	XP_004507812.1	0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	2.00E-119	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|V7C9I6\|V7C9I6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26794.1}

Sequence

Transcript Sequence

>Glyur000231s00022063.1
ATGGTGGGAATTGAGAGAGGAGGACTCAAGGGTTTTCGAGGCGGGTGGAGTGTGCCGCCGAAGCCATGTGATTCTTGCAAGCTGGCTTCGGCGGCGCTCTTCTGCCGCCCCGATTCAGCGTTCCTCTGCATCGCGTGCGATTCCAAGATTCACTGTGTTAACAAACTTGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCAGCCTCCGTCACGTGCAAGGCAGACGCAGCTGCACTCTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCACGCCGCCACGAGCGTGTCCCCGTCGAGCCCTTCTTCGACTCCGCCGAGTCCATCGTCAAATCCTCCGCCGCCGCCNNNTCCTTCAACTTCGTCGTCCCCACCGACGACGACGCGGCGGCGTGGCTCATCCCGAACCCCAATTTCGGATCCAAGCTCATCGACGCCCCGGATATCAAGTCCAGGGAGATGTTCCTATCGGACATGGATCCGTTTCTCGATTTCGATTACCCTAACTCCTTCCACAACAACAACAGCAGCAGCGCCGTAAACGACAGCGTCGTTCCTGTTCAAACCAAACCCGCTCCCGCTCCGGCGCCGCTTATGAATCATCACTCAGAGGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCCTCGTTTAACTACCCTTCTCAGTCTCTTAGCCAAAGCGTTTCGTCGTCTTCGCTTGATGTGGGAGTGGTACCGGAGGGGAACGCGGTGTCGGAGATATCGTACCCGTTCGGTATGAACAGTTCGGAGTCGAGTGGGATGGTTTCGGGAGGTGGGAGCCAATCTGGTGCGACGCAATTGTGTGGGATGGATCGTGAAGCGAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACCATTCGATACGCTTCGCGAAAGGCTTACGCAGAAACCCGGCCCAGAATCAAGGGCCGGTTCGCCAAACGAACCGAAATCGACTCGGAGGTCGACCGTCTCTATAGCCCTGCCCCTCCACCCCTCACCGTCCCTGGATCACTTGTTATGGACTCTCCATACGGCGTCGTGCCAACGTTTTAGTAAACAGCGGAGGGTGCATGAATCTTCTATACTCTCTCTTTAGTATTGCGAAATCTTAGAATAATGATTAGGGATTCTGTGGGAACCGTTGATTATTATTAGGGGGAAAAAAGGCGATGAATCGGTACGAACGTGATGGTTCGANTTGGGCGGGGTTGTACGTTGTGGTGGCGGAGCGTGATGCAGAAGCTTATGGACCTGACCTGAAGATTTGTCTCGAGTAGAAAAAAGCCCTTTATTTTATTTGAACTTTACAGGGTTGCTGCTGCTGCTGCTGCTGGTTCATGTTCATCTCGTGTAGAATTTAGAATCTGTACTGTAAACTCTTTTCACTGCCTGTGATGTCTTTTTTCAGTAAAAAAAAAAGTGTCTTTTTCAAACGGATCACGGATCTCTTTCCCCATCCCCATTGGTTGGCACTCCCCAACTGTATCATTTTTTTTTTCTTTTTCTTTTGTGCGGGGTATCCTTTTTTTAATTTTTTGTCAAAANGGGTATCTTAACTTGGACTCTTCAACGTATTGTAGAGACCACGCCAGGATCAGTTTTTTTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00231	23618	25373	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000231s00022063.1	PF00643.19	zf-B_box	63	108	8.70E-07
Glyur000231s00022063.1	PF06203.9	CCT	290	333	1.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.437
SRR1783600	control	11.453
SRR1783602	moderate drought stress	14.740
SRR1811619	moderate drought stress	14.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.973
DRR006520	Root Summer glycyrrhizin high producing strain	28.788
DRR006521	Root Winter glycyrrhizin high producing strain	18.212
DRR006522	Root Winter glycyrrhizin high producing strain	17.222
DRR006523	Root Summer glycyrrhizin low producing strain	61.407
DRR006524	Root Summer glycyrrhizin low producing strain	62.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	126.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	142.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	85.066
SRR2868004	Drought Stress (root)	153.171
SRR2967015	Control (root)	119.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	232.764
SRR9715740	Leaf	232.313
SRR9715741	Leaf	224.488
SRR9715739	Root	188.413
SRR9715742	Root	192.956
SRR9715743	Root	188.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.034
SRR8749028	MeJA induced 9h	58.649
SRR8749029	MeJA induced 9h	36.457
SRR8749030	Uninduced	61.907
SRR8749031	Uninduced	12.604
SRR8749032	Uninduced	37.852

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.402
SRR8400027	Control - Root	32.589