Gene detail

Gene detail information of Glyur000230s00016901

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54320.1	2.00E-124	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
NR	XP_004493191.1	0	PREDICTED: ALA-interacting subunit 3-like [Cicer arietinum]
Swissprot	tr\|Q9SLK2\|ALIS3_ARATH	6.00E-161	ALA-interacting subunit 3
trEMBL	tr\|I1N8A7\|I1N8A7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G29130.1}

Sequence

Transcript Sequence

>Glyur000230s00016901.1
CTTTGACATTCCAAATCTGTCACCCCTTTTCCATACAAACCTTAAACAGACAGCTAGACAAAACTTATGAATATANATATAATATAAATAAATATCTATACATATATAGATAAAGAGAGATAAAAAAAAAATTAAGGCCAAGCTTTTTTGCTTTTTCATCTTCCAACAAAAATCTCCCACTTTGCATGTTAATTTTAACCACATTCTCCTAATTTCTCTGTCTTTGCAGTCGCATAATTGGATAAAGGTTTCTTTGCTATGTCTATAGAACCTTCATCCAGCTCGGTGGCTGTCGCAGATGGAAAATCCAAGAATTCCAGGAAACCCAAATATTCTAGATTCTCACAGCAAGAACTTCCTGCGTGGCAACCAATTCTAACACTTGGATGGGTCATTTCAATATTTACAGTTATAGGACTCNTCTTCATTCCTGTTGGTCTTGCTTCATTGTTCGCATCAGAGCGTGTGGTAGAGGTTCCATTCAGATATGATGATAAATGCCTTCCACGTGATTATAGAGACAATGCAGTGGCATATATAAAAGATGATAGGACTAACAAAACTTGCACCAGGAAATGGACTGTTAAGAATAAAATGAAAGCCCCTGTTTATGTCTATTATCAGCTTGATAACTTTTACCAGAACCATCGCCGATATGTTAAAAACAGAGATGATAAACAACTGAGGAGTCGTGCAGCTGAGAATGATGTAAGCTCATGTAGTCCAGAAGACTATACACCNAACGACTTGGGTCATCAGCCAATTGTTCCTTGTGGCCTTATTGCATGGAGTCTGTTCAATGACACATACAAACTTTCAAACAATAATAAGGACTTGGTGATCAACAAAAAGAACATAGCATGGAAGAGTGACCAAAAGGCCAAATTTGGGTCTGATGTTTATCCAAAGAATTTTCAGGCTGGAGGTTTGATTGGGGGTGCTAGACTTAATGAGAGCATACCTTTGAGTGAACAAGAGGATCTCATTGTTTGGATGCGAACGGCGGCACTGCCCACTTTCAGAAAGTTATATGGGAAGATTGAGGCTGACCTTGAAGTTAATGATGAAATAGTGATGGTAATAGAGAACAATTATAATACATATCAGTTTGAGGGAAGAAAGAGCCTGGTTCTTTCAACCACAACCTGGATTGGTGGAAAGAATGACTTCTTGGGGATTGCATATATCGTCATTGGTGGGCTTTCCTTGTTGTTGGCTGTAGCTTTCCTAGTTCTGTATGTGATGAAGCCAAGACCCCTTGGGGATCCAACATACCTGTCTTGGAACAGATATCCANGAAGTTTGAGATGATCATGGGATATTTCATCTTTTGAGTTCATTTAACAATTCATTCTTTTCCCATATATATCTCAAGAAATGGATCTTTCACGAGGCTTGTGCTTGATCGATCCAACTTTAATCTTGACGTATGACAGACTTTTTTCACTTTCAATATATGGCAAGATATAAATCTGCCACTTTGNGGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	237960	242630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016901.1	PF03381.10	CDC50	64	337	1.70E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.234
SRR1783600	control	0.260
SRR1783602	moderate drought stress	0.485
SRR1811619	moderate drought stress	0.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.291
DRR006520	Root Summer glycyrrhizin high producing strain	0.288
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.072
DRR006523	Root Summer glycyrrhizin low producing strain	0.518
DRR006524	Root Summer glycyrrhizin low producing strain	0.538
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.730
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.460
SRR2868004	Drought Stress (root)	0.758
SRR2967015	Control (root)	0.652

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.872
SRR9715740	Leaf	17.975
SRR9715741	Leaf	3.382
SRR9715739	Root	0.066
SRR9715742	Root	0.000
SRR9715743	Root	0.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.093
SRR8749028	MeJA induced 9h	0.169
SRR8749029	MeJA induced 9h	0.544
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.057
SRR8400027	Control - Root	1.611