Gene detail

Gene detail information of Glyur000230s00016897

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G32450.1	1.00E-101	RNA binding (RRM/RBD/RNP motifs) family protein
NR	XP_004493189.1	1.80E-165	PREDICTED: uncharacterized protein LOC101488266 isoform X2 [Cicer arietinum]
trEMBL	tr\|Q2HVL4\|Q2HVL4_MEDTR	2.00E-154	RNA-binding region RNP-1 (RNA recognition motif) {ECO:0000313\|EMBL:ABD28433.1}

Sequence

Transcript Sequence

>Glyur000230s00016897.1
CAGGGTCTTAACGAGGTAAACATCATGATTACATTCCTTGCCTCGTCATACATTCTTCTTTGTTCTTCTCTCTTTCTTTCTCTCTGTCTCTCTTCTTCAATGCAACTCTTCTCTGTTCGGTGACACNCAAAAAATCACTTTTTTGAACGTAGCACACACACACTTGACACTACNCTTCTCTTTGTGGACTCTGCTTCTAGCTACCCTTCCTTCTTCTATTCCCTGATATCACAATGCAGAGTCAGACGAGGACGGTTCAAGTGAAGCAAGTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAATTCTTCTCCTTTTCTGGTGAAATCGAGCACATCGAGGTCGTTAGTGAATATGGGAAACCAAAGACTGCATTTGTGACATTTAAAGATCCCAGAGCTCTTGAGATTGCGTTGTTGTTATCGGGAGCAACAATAGTAGACCAGATTGTAAGTATAACTCCAGCTGAGAACTATGTAGCAAATCGTGAGATGCAAGAAGTAAGGGTGGTGGAACATGCTATAAATGTTGCTCCTTCNGAGAATATTGAGGACGAGAAATCTGGCTCCACCAATGGAAAAGTATATCTCAGTAAAGCACAAGATGTAGTTACAAGTATGCTAGCTAAAGGATTAGCAATAAGGCAAGATGCTGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAGTTGACTGCTAATGCATCTGCAAAGGTCGTTTCTTTTGACAAGAGAGTTGGATTGACGGAGAAACTGACAGTTGGCCTTTCTGTAGTGAATGAGAAAGTGAAGTATGTNGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCAGCAATATTTGCAGCTGAGAGGAAGTTGAATGATACTGGATCAGCTGTCAAAACAAGCAGATACGTGACTGCTGGAACAGCATGGTTAAACGGTGCTTTTAGCAAGGTGGCAAAGGCAGGAAATGTTGCTGGTACTAAAACTAGAGAAAAGTTTCATGAACCACCAGTGGCTGTATAAGGCCAGAATTTTGATAATCACAGTCAATTCATCAGTTCTTCAGTGAAGATATCTTTGAGAGCTGTTGTGTGTTAAACCATTTGGTCTTTGACATCATGCACTGCTTTCTTTTCTTTCCCCTCAGCAGTTTGGATGTTTGTTAATGGCAAGTATGGTGATTCAAATTAATCCAATTTTTTGTATTCTTTTTGTCATTCTCATTCTGGTGTTGTAGCTGTTGCTTCTATGTAATTTAGCATTGGTAATTTTGGCTTTTTTCTTTCTNTCTTTCTTTGTCAAAAGGAAATCATAGGCGTGATGCAACTGTATTTCATTTTTCAGAGTGCAAAAAGTTTAGCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	204519	209061	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016897.1	PF00076.17	RRM_1	11	68	1.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.279
SRR1783600	control	14.352
SRR1783602	moderate drought stress	15.962
SRR1811619	moderate drought stress	15.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.604
DRR006520	Root Summer glycyrrhizin high producing strain	23.823
DRR006521	Root Winter glycyrrhizin high producing strain	45.950
DRR006522	Root Winter glycyrrhizin high producing strain	45.116
DRR006523	Root Summer glycyrrhizin low producing strain	32.179
DRR006524	Root Summer glycyrrhizin low producing strain	32.425
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.239
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.425
SRR2868004	Drought Stress (root)	54.806
SRR2967015	Control (root)	67.195

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.683
SRR9715740	Leaf	26.001
SRR9715741	Leaf	26.528
SRR9715739	Root	10.194
SRR9715742	Root	20.349
SRR9715743	Root	20.114

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.224
SRR8749028	MeJA induced 9h	15.790
SRR8749029	MeJA induced 9h	16.959
SRR8749030	Uninduced	12.106
SRR8749031	Uninduced	10.115
SRR8749032	Uninduced	12.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.676
SRR8400027	Control - Root	66.609