Gene detail

Gene detail information of Glyur000230s00016892.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19070.1	1.00E-61	spermidine hydroxycinnamoyl transferase
NR	XP_003624650.1	0	Anthranilate N-benzoyltransferase protein [Medicago truncatula]
Swissprot	tr\|O64470\|SHT_ARATH	1.00E-87	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|Q2HVM4\|Q2HVM4_MEDTR	0	Transferase family protein {ECO:0000313\|EMBL:AES80868.1}

Sequence

Transcript Sequence

>Glyur000230s00016892.1
ATGTTGGTTACCATCCGCCGTTCATACACAGTGACCCCTTCTGACACCACACCAACACTGACACTCCCTCTTTCCCTTTGCGACCAAATCAAGCTCCCCAACCACGGATCTCAGCTTTATCTCTACACCACCACCATCAACAACAACAACAACAACAACAACAACAACAATGGTTCTTCTTCTTCTTCATCATCATCAACATCACTCGGCTCTTGCATGCACATTCTCAGAACCTCTCTCAGCAAAGTATTGACTCACTACCACTCCTTTGCCGGTCGATTGCGCTGGATCCAAGGAGGCCGCTTGGAGCTNCTCTGCAACGCTAAAGGAGCCCTCCTCTTAGAAGCCACGTGTGAAATTGTGGGAGAACAAAAACTGGTGCCAAAGATTGACTATGATGTGCCGTTGTTGGCGATCCAGCTTACTAGGTTCCCTTGTGGGTCCCTCATTCTTGGTGTTTCTCTGTTTCGTGCTCTTGTCGATGGAGCTTCTGTTGGGAGCTTCATGCCCTCATGGGCCAAACTAGCCAGGGGAGAGAGTCTGGAAGATTNGAGTTTGATGCCAGNTCTNGATCGAACTCTGTTGGATTCACGAAGGCTGCGTTTGCCTCCACGTTTTCCACACCTCGAGTTTTCTCCACCACCCCTTTGGGAAGGTAGCAATTATAAGGTGACAAAANCAATGTATGCCACCGCCATCTTAAAACTCACCAAACACCAAGTTGAGAAACTAAAGAAAAAAACCAACAAGGGACAGGGGCAACAACAACAACATTATACTAGTTTTGAAGTCATAACTGGTCACTTGTGGAGGTGTGTTTCAAAGGTGAGAAATAATGCTGGTGGAAATTGGAACCAACCAACAAGGTTAACCACTTTGGTTAATTGCAGAAACCGGTTGAACCCACCTCTGCCAAAAACTTATTTTGGGAATGCAACGTTTCCCACTGTGACACAAACATGTTCCTTTGATGAGGTTGTACATAAGCCTCTGAGTTATGTGGTTGGGAAAGTGAGGGAAGCGATTGGGAAGGTGAGTGATGAGTATGTGAGGTCTGCTCTTGACTNTGTAGCGAATCAGAAGGACTTGAATTTGCTTAGGGACACGTTTTACAACAACCAATTCAGGGGAAGAGGAGGGGACCCCAATTTGTATGTTGTTGGTTGGACCAATTTTTCGTTTTTTGAGACGGATTTTGGGTGGGGGAAACCTGATTGTTTGGTTCCTGGGAATGTTAATTCTGATGGTAAGGCTTTTCTTCTTGACACTAGAATTGGTGATGGGTTCATTGTGNCCATTTGTTTGCAAGCTTCCCATATAGATGCTCTGAAGAAGTTGTTTTATGAGGATATAGAGCCTGTTGCTGCTTCCAAACTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	154090	156092	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13065	E2.3.1.133, HCT	EC:2.3.1.133	Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016892.1	PF02458.10	Transferase	2	448	4.60E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.163
SRR1783600	control	9.000
SRR1783602	moderate drought stress	13.984
SRR1811619	moderate drought stress	13.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.588
DRR006520	Root Summer glycyrrhizin high producing strain	10.097
DRR006521	Root Winter glycyrrhizin high producing strain	10.458
DRR006522	Root Winter glycyrrhizin high producing strain	9.378
DRR006523	Root Summer glycyrrhizin low producing strain	6.711
DRR006524	Root Summer glycyrrhizin low producing strain	6.648
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.944

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.198
SRR2868004	Drought Stress (root)	13.701
SRR2967015	Control (root)	18.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.222
SRR9715740	Leaf	4.911
SRR9715741	Leaf	7.969
SRR9715739	Root	2.195
SRR9715742	Root	7.241
SRR9715743	Root	5.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.366
SRR8749028	MeJA induced 9h	8.285
SRR8749029	MeJA induced 9h	4.412
SRR8749030	Uninduced	2.736
SRR8749031	Uninduced	1.033
SRR8749032	Uninduced	2.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.548
SRR8400027	Control - Root	15.223