Gene detail

Gene detail information of Glyur000230s00016887.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19070.1	5.00E-78	spermidine hydroxycinnamoyl transferase
NR	XP_004493179.1	0	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Cicer arietinum]
Swissprot	tr\|O64470\|SHT_ARATH	2.00E-97	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|I1ML04\|I1ML04_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G04360.1}

Sequence

Transcript Sequence

>Glyur000230s00016887.1
ATGGTCAGCATCCATTCCCGTTACGCTGTCATCCCCTCCGAACCCACCCCAAACGGAAAACTCTANTCCCTCTGTGAACAAATCAAGCTTCGAACTCACGCTCCTCTCCTCTACGTCTACAACAAACCACACAACGCAGCACCCCCAATCTCCGTTCAAATCCTTATAAACTCTCTCAGCAAGGCTTTGGTTATTTACTATCCACTAGCTGGAAGGTTGGGTTGGATTCATGAAGGAGACCGATGGGAACTCCACTGCAACGCCAAGGGAGCGCTGTTATTAGAAGCCACATGCGAAGAACCAGAGAGTTTAAATGATTTGGGAGATTTCGTGCCAACCAATTTGGTTTCACAACTGATACCAAACGTCGACGTCGAATACGATGTCGTTCCCATCGAGGAAATGCCTCTGTTGGCGGTGCAACTAACAAGATTCCGTTGCGGAGGTTTCACCTTGGGAATCGCCTTATGTCGAGCCGCGATTGACGGAACGGCAGCCATGCGTTTCGTCAGCACGTGGGCTAAGCTGGCGCGTGGGGAGGGGCGTTTGGACACAATAACGGAAATCCCGTGTCACGATCGAACCGCGCTAGACTCGCGCAAGGCGCAGCAGCACTACTCGCACCACCGCCATTGCGAGTTTCACGCGCCTCCTATTTGGTTGGGAGACACGGAGGCAGTTACAGAAGTGGTGGTTAGTACCATGAAACTCACGCTNGAACAAATCAAGAAGCTAAAAAACGCAGCTAATGCAAGAGTACGTTATTCGACTTTTGAGGTTGTTGCGGGGCATGTTTGGAGGTGCGTGANCAAAGCGCGCTATTATGGAAACGGTGAACAACAAACGAGGTTGTCCACGTTGGTTAACTGTAGAAACCGTTTGGAACCGCATCTTCCAAACGGTTACGCAGGGAACGCGGCGTTTCCTACCGTGACATCAACGTGCACCTTTGGTGAACTTATGCAAAAGCCTTTGGGNTATGCGGTTGAGAATGTTAGAAGAGCACTTGAGAGGGTGAATGGAGAGTTTGTTGGTTCGGCGCTTGGTTACGTTGATAGGGAGAAGGATATGGATTTGGTGAGGTATAATTTTCACTACCCCGCGAAAAGTGTGTTGGGTCGGGGAATGTATAAGGGGAACCCGAACCTCTTTGTTGTNAGTTGGATGAATTTCTCGTTTAGGGATGCGGATTTTGGGTGGGGCGAACCGGTTTATTTTGGGCCGGGTTATATGGATTCTGAAGGGAAGGCTTTTGTTATGAATAATGTCAATGGCGATGGCGTTGTTGTGGCGATTTGTTTGGAGGCTTCTCATATGGATCGGTTTAGGAAATTGTTTTATGATGATATTACCGAAGAGGGGTTTCGTACTTCTTCCAAATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	128701	130086	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13065	E2.3.1.133, HCT	EC:2.3.1.133	Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016887.1	PF02458.10	Transferase	1	448	2.60E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.142
SRR1783600	control	0.157
SRR1783602	moderate drought stress	0.297
SRR1811619	moderate drought stress	0.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.570
DRR006520	Root Summer glycyrrhizin high producing strain	0.435
DRR006521	Root Winter glycyrrhizin high producing strain	3.624
DRR006522	Root Winter glycyrrhizin high producing strain	3.995
DRR006523	Root Summer glycyrrhizin low producing strain	0.319
DRR006524	Root Summer glycyrrhizin low producing strain	0.359
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.690
SRR2868004	Drought Stress (root)	5.325
SRR2967015	Control (root)	3.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.002
SRR9715739	Root	0.518
SRR9715742	Root	1.673
SRR9715743	Root	1.418

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.424
SRR8749028	MeJA induced 9h	23.554
SRR8749029	MeJA induced 9h	48.796
SRR8749030	Uninduced	69.699
SRR8749031	Uninduced	129.092
SRR8749032	Uninduced	215.612

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.726
SRR8400027	Control - Root	0.557