Gene detail information of Glyur000230s00016883 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38040.1 | 8.00E-75 | Exostosin family protein |
| NR | KHN34685.1 | 0 | Putative glycosyltransferase [Glycine soja] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 8.00E-70 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|K7MXU9|K7MXU9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29020.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00230 | 99505 | 103298 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000230s00016883.1 | PF03016.10 | Exostosin | 136 | 413 | 2.40E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.763 |
| SRR1783600 | control | 4.542 |
| SRR1783602 | moderate drought stress | 4.904 |
| SRR1811619 | moderate drought stress | 5.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.278 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.367 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.366 |
| SRR2868004 | Drought Stress (root) | 7.243 |
| SRR2967015 | Control (root) | 7.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.471 |
| SRR9715740 | Leaf | 3.833 |
| SRR9715741 | Leaf | 6.084 |
| SRR9715739 | Root | 0.650 |
| SRR9715742 | Root | 1.460 |
| SRR9715743 | Root | 1.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.138 |
| SRR8749028 | MeJA induced 9h | 8.849 |
| SRR8749029 | MeJA induced 9h | 11.582 |
| SRR8749030 | Uninduced | 7.805 |
| SRR8749031 | Uninduced | 9.864 |
| SRR8749032 | Uninduced | 7.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.269 |
| SRR8400027 | Control - Root | 7.956 |