Gene detail information of Glyur000230s00016880 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19820.1 | 4.00E-66 | ARM repeat superfamily protein |
| NR | XP_004493173.1 | 9.77E-126 | PREDICTED: importin-5-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|A5XEM2|A5XEM2_MEDTR | 6.00E-119 | Putative RNA binding protein {ECO:0000313|EMBL:ABK28849.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00230 | 79201 | 80518 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.008 |
| SRR1783600 | control | 2.911 |
| SRR1783602 | moderate drought stress | 4.398 |
| SRR1811619 | moderate drought stress | 4.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.584 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.737 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.949 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.380 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.506 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.139 |
| SRR2868004 | Drought Stress (root) | 1.466 |
| SRR2967015 | Control (root) | 1.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.217 |
| SRR9715740 | Leaf | 0.972 |
| SRR9715741 | Leaf | 0.693 |
| SRR9715739 | Root | 1.161 |
| SRR9715742 | Root | 3.142 |
| SRR9715743 | Root | 2.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.932 |
| SRR8749028 | MeJA induced 9h | 2.485 |
| SRR8749029 | MeJA induced 9h | 0.312 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.783 |
| SRR8400027 | Control - Root | 3.902 |