Gene detail

Gene detail information of Glyur000230s00016878

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G19820.1	ARM repeat superfamily protein
NR	XP_003624635.1	Ran-binding protein [Medicago truncatula]
trEMBL	tr\|A5XEM2\|A5XEM2_MEDTR	Putative RNA binding protein {ECO:0000313\|EMBL:ABK28849.1}

Sequence

Transcript Sequence

>Glyur000230s00016878.1
ATGATGCAAACTTTGACCGAGGCACTGAATTCTGGCCAGGAGGCCACTGCACAAGAGGCTCTTGAGCTACTCATTGAGCTTGCTGGGACTGAGCCTCGTTTCCTGCGCAGGCAGATTACTGATGTTGTCGGCTCCATGCTGCAGGTTGCTGAGGCTGAGTCCTTAGAAGAAGGGACGCGTCACTTGGCTATTGAGTTTGTTGTGACACTTGCTGAGGCAAGGGAGCGNGCTCCTGGNATGATGAGGAAGNTGCCGCAGTTTGTGCGGAANNTNTTTGGNNTGCTGATGAATTTGTTGNTGGANATNGAGGATGACCCTGCGTGGCATGGTGCGGAGACTGAAGATGAGGATGCTGGTGAGACCAGTAACTATGGGTTTGGACAGGAGTGTTTGGATAGGCTTTCGATTTCTTTGGGTGGGAACACGATAGTGCCGGTTGCATCCGAGTTGTTGCCGACTTACTTGGCTGCACCTGAATGGCAAAAGCACCATGCNGNGCTCATTGCACTTGCACAAATTGCNGAAGGTTGTTCAAAGGTGATGATAAAGAATCTGGAGCAAGTATTGTCAATGGTTTTAAATTCATTTTGTGATCCGCACCCCCGAGTGCGATGGGCGGCTATAAATGCAATTGGACAATTGTCCACAGATTTAGGGCCAGATTTGCAGGTTAAATATCACCACTTAGTGTTGCCGGCATTAGCTGGAGCAATGGATGATTTTCAAAATCCCCGAGTACAGGTTCTAATGTTTGTTCACATCGATGCTAAACAAGTCATTACTGTTATAATAACTATACTCAATTCTATGAAGGCTCATGCTGCTTCTGCGGTGCTAAATTTCACTGAGAATTGTACCCCAGATATCCTAATACCTTATTTGGATGGGATTGTGAGCAAACTTCTTGTACTCCTGCAGACTGGGAAGCAAATGGTTCAAGAAGGGGCTTTGACAGCTTTAGCATCAGTTGCCGATTCTTCACAGGAGCAATTTCAGAAGTATTATGATGCTGTGANGCCATACTTAAAAGCTATTTTGATGAATGCAAATGATAAATCTAATCGTATGCTTCGTGCCAAAGCAATGGAGTGCATTAGCTTGGTAGGAATGGCTGTTGGAAAGGACAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTTTTGATGTCACTGCAACAATCTCAACTGGANGCTGATGATCCAACTGCTAGTTACATGTTACAAGCATGGGCGCGGCTTTGCAAGTGCCTTGGGCAAGATTTTCTCCCATATATGGGTTTTGTCATGCCTCCCTTGCTCCAGTCTGCACAACTTAAGCCTGATGTGACGATTACATCAGCAGATTCNGATGCTGAATTTGATGAAGATGATGACAGCATTGAAACCATCACTCTTGGGGATAAAAGAATAGGCATTAAGACCAGTGTCTTGGAGGAGAAGGCTACAGCTTGTAACATGCTATGTTGCTATGCTGATGAGTTGAAGGAAGGATTTTTTCCTTGGATTGACCAGGTTGCTTTCACTTTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGCTATGCCGGAACTGTTGTCGTCAGCAAAATCAGCTGTAGAGAAGGGACAGTCACAAGGTCGCGATGAGACTTACATAAAACAGTTGTCTGATTATATAATACCAAATTTGGTTGAAGCTTTACACAAGGAGCCAGAGGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGGTCTCTGGGCCACATCTAGATGAAAAGCAAGTAAGGAGCATTATTGATGAGATTAAACAAGTCATCACGGCCAGTTCATTAAGAAAACACGAAAGAGCAGAGAGGGCCAAAGAAGAGGACTTTGATGCTGAAGAAGGAGAATTACTCAAGGAAGAAAATGAGCAAGAAGAAGAACTTTTTGATCAAATCGGTGATTGCTTGGGGACTTTGATNAAAACATTCAGGGCATCTTTTTTGCCCTTCTTTGATGAGCTTTCNTCATACCTAACACCTATGTTTGGTAAAGATAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCACTGCCGCGAAGCAGCTCTTAAATATTATGATTCATATCTTCCATTCTTGCTTGAAGCTTGCAATGATGAATGTTCAGATGTTCGACAGGCAGCTGTTTATGGAGTTGGTGTTTGTGCTGAGTTTGGTGGATCTGTTTTCAAACCCCTTGTTGGAGAGGCACTTTCANGGTTAAATGCTGTGATAACGCATCCAGATGCACAACATTCTGATAATGTAATGGCATATGACAATGCTGTTTCAGCTCTTGGGAAAATATGCCAGTTCCATCGTGATAGCATAAATGCAGCACAGGTTGTTCCTGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTAATTGAGGCTAAGGTTGTGCATGACCAGCTTTGTTCAATGGTTGAAAGATCAGATAGAGAACTNATAGGTCATAACAATCAATATCTTCCCAAAATTGTCGCAGTTTTTGCCGAGATTTTATGTGCGGGAAATAATCTGGCAACCGAACAAACCNTCAGTCGGATGATTAATTTATTGAGACAACTTCAACAGACGTTGCCACCTTCCACCCTTGCTTCAACCTGGTCATCTTTGCACCCTCAGCAACAGCTTGCACTCCAGTCAATCCTATCATCCTAGTTAATTTTGGATTGTTGTATTCCATTGCCTTTACAAGATGCGCGCCGCGCCTATCGTCACGGGGTGTCATAGTTGCCCTTTGGGAAGCTTCTGTGACAGGTCAAAATTGTTCCTTTAGCATTGGAGTGTATGGTTCTGTGTTTCTTGATTGCTTAATCCATATTTGGTAATGCAGCGCATGACTTTGTTGCCAGAGCGTTGTTGAGTTGGTTGGNATGAGAAGCAGAGTTTTGGTGTTGAATGTGTATATTGAAAGTGTTTTGGTCAAAAAGGGATGAACAAGTGCNACTTGATCCTGTCTGTGGATGATGGGGGCGAGGCGTGACCGAGTCATGATGCATGACTCAGCAGAACTGCACCGCATAGTATTCTTTTGTTTTTTTTTAGGGTTGTAACAGTTTTGACGAGTCATTTCCTTGGATGTCTGAAACNATTTGTCATAGTTTGATTTATTTGTATATCCGCTGGCTTCTATCCTTGCTCTTCCCCTTTTATTTCCATTGTTGTGAAACCAACTCCGAACCCCAAGCCATTTTGGGAGATTTCAAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	70044	78779	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016878.1	PF02985.17	HEAT	188	215	7.50E-05
Glyur000230s00016878.1	PF02985.17	HEAT	717	744	0.00016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.122
SRR1783600	control	3.185
SRR1783602	moderate drought stress	3.984
SRR1811619	moderate drought stress	3.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.090
DRR006520	Root Summer glycyrrhizin high producing strain	4.862
DRR006521	Root Winter glycyrrhizin high producing strain	3.498
DRR006522	Root Winter glycyrrhizin high producing strain	3.552
DRR006523	Root Summer glycyrrhizin low producing strain	3.155
DRR006524	Root Summer glycyrrhizin low producing strain	3.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.071
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.002
SRR2868004	Drought Stress (root)	6.857
SRR2967015	Control (root)	6.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.622
SRR9715740	Leaf	5.852
SRR9715741	Leaf	4.111
SRR9715739	Root	2.444
SRR9715742	Root	5.249
SRR9715743	Root	4.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.961
SRR8749028	MeJA induced 9h	6.274
SRR8749029	MeJA induced 9h	5.772
SRR8749030	Uninduced	1.572
SRR8749031	Uninduced	0.813
SRR8749032	Uninduced	0.840

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.966
SRR8400027	Control - Root	7.931