Gene detail

Gene detail information of Glyur000230s00016874

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G19770.1	tubulin alpha-3
NR	KDP39691.1	hypothetical protein JCGZ_02711 [Jatropha curcas]
Swissprot	tr\|O22349\|TBA3_ELEIN	Tubulin alpha-3 chain
trEMBL	tr\|A2Q5W0\|A2Q5W0_MEDTR	Tubulin/FtsZ, C-terminal {ECO:0000313\|EMBL:ABN08980.1}

Sequence

Transcript Sequence

>Glyur000230s00016874.1
GTTTCTGTCAGATCATTATAAACGCTAAAGAGTCAGAAAATAAATATCAAAGATTCTTCATTGCCTTTTTTTCCTTTCTTTCTACTTTGAACTTTCCTCCTCCTTGTGATCTTCATTTGACGCACAGAAGATGAGAGAGATTATAAGTATTCATATTGGACAAGCTGGAATTCAGGTGGGGAATTCATGTTGGGAGCTCTATTGCCTTGAACATGGGATTCNACCTGATGGGTTGATGCCAAGTGATACCTCACCTGGCATATCACGTGATGCTTTCAACACCTTCTTCAGTGAGACGGGTTCCGGGAAGCATGTGCCAAGGGCTTTATTTGTTGATCTGGAACCTACTGTTATTGATGAAATAAGAACTGTTGGAAGAGAGATTGTTGAACTATGCCTTGATCGTATCAGAAAATTAGCAGACAATTGCACTGGTTTGCAAGGATTCCTGGTTTTCAATGCTGTTGGTGGTGGTACTGGTTCTGGTTTGGGATCATTGCTTTTGGAAAGGTTGTCTGTAGATTATGGGAAGAAGTCTAAACTTGGCTTTACCATCTACCCTTCTCCTCAGCACACTGATGTGGTTGTGCTTTTGGACAATGAAGCAATATATGATATCTGCAGAAGATCATTAGATATAGAAAGGCCAACTTACACCAACTTGAACCGTTTGATTTCTCAAATCATCTCTTCCTTGACCACTTCCTTGAGATTCGATGGCGCAATCAACGTGGACATTACCGAGTTCCAGACTAACCTGGTGCCATATCCTCGGATCCATTTCATGCTTTCATCTTATGCCCCGGTAATATCTGCCGCGAAGGCCTACCANGAGCAGCTATCAATCCCTGAGATCACCAGTACAGTTTTTGAGCCCTCAAGTATGATGGCTAAGTGTGATCCAAGACATGGGAAGTACATGGCATGCTGCCTGATGTATCGCGGAGATGTAGTGCCCAAAGATGTAAATGCAGCTGTTTCAAATATCAAGACTAAGAGAACAGTTCAGTGTCCTACTGGTTTCAAGTGTGGTATCAACTACCAGCCTCCAACAGTGGTGCCAGGAGGTGATCTTGCCAAGGTGATGCGCGCGGTTTGTATGATAAGCAACAACACAGCTGTTGCTGAGGTTTTCTCTCGCATTGATTACAAGTTTGATCTCATGTATGCTAAGAGGGCATTTGTGCACTGGTATGTGGGTGAAGGAATGGAAGAAGGTGAATTCTCAGAAGCCAGGGAGGATCTTGCTGCTCTTGAAAAGGACTATGAAGAAGTTGCAGCAGTAGGTGAAGATGGTGAAGATGCTGANGAGGGTTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00230	46911	51290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000230s00016874.1	PF00091.20	Tubulin	3	79	5.90E-18
Glyur000230s00016874.1	PF00091.20	Tubulin	80	176	8.60E-20
Glyur000230s00016874.1	PF03953.12	Tubulin_C	214	339	1.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.630
SRR1783600	control	36.995
SRR1783602	moderate drought stress	32.462
SRR1811619	moderate drought stress	31.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	78.336
DRR006520	Root Summer glycyrrhizin high producing strain	77.353
DRR006521	Root Winter glycyrrhizin high producing strain	211.044
DRR006522	Root Winter glycyrrhizin high producing strain	204.676
DRR006523	Root Summer glycyrrhizin low producing strain	191.979
DRR006524	Root Summer glycyrrhizin low producing strain	190.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	82.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	82.012

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	109.459
SRR2868004	Drought Stress (root)	75.379
SRR2967015	Control (root)	112.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.099
SRR9715740	Leaf	27.137
SRR9715741	Leaf	34.944
SRR9715739	Root	36.282
SRR9715742	Root	49.157
SRR9715743	Root	46.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	95.183
SRR8749028	MeJA induced 9h	135.101
SRR8749029	MeJA induced 9h	108.487
SRR8749030	Uninduced	121.167
SRR8749031	Uninduced	99.679
SRR8749032	Uninduced	76.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.984
SRR8400027	Control - Root	68.648