Gene detail

Gene detail information of Glyur000229s00018890

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24220.1	2.00E-159	NAD(P)-binding Rossmann-fold superfamily protein
NR	ABD33275.2	0	progesterone 5-beta-reductase, putative [Medicago truncatula]
COG	YP_005612338.1	3.00E-82	hypothetical protein BJ6T_75030 [Bradyrhizobium japonicum USDA 6]
Swissprot	tr\|Q9STX2\|VEP1_ARATH	0	3-oxo-Delta(4,5)-steroid 5-beta-reductase
trEMBL	tr\|Q2HRJ8\|Q2HRJ8_MEDTR	0	Progesterone 5-beta-reductase, putative {ECO:0000313\|EMBL:ABD33275.2}

Sequence

Transcript Sequence

>Glyur000229s00018890.1
TTGTGCGTGCGTGTGCAGATAACGAAGTTGGAGGAAGCACCGCGAAGCTTCCAGAACGTGGCACTAGTTATAGGTGTGACTGGCATCGTGGGGAATAGCCTAGCTGAGATTCTACCTCTCCGCGACACACCGGGTGGTCCATGGAAGGTTTACGGCGTGGCTCGCCGTCCACGACCCACGTGGAACGCCGACCACCCCGTCCACTACATCCAGTGNGATGTCTCCGACCAAAACGACGCCGAATCGAAGCTCTCGCCGTTAACCGATGTGACCCATATCTTCTATGTCTCGTGGGCCAGCAGGCCCACGGAGGCCCAAAACTGNGAGGTGAACGGTGCCATGTTGAGGAACGTCCTACGCGCTGTCATNCCAAACGCTCCCAATCTCTGCCACGTGTCCCTTCAGACAGGTGCCAAGCACTACGTGGGACCCTTTGAACTGATTGGAAAGATCAAGGCTCATGAGACACCCTTCACAGAGGATTTGCCACGCCTTGATGCACCCAATTTCTATTACACGCAGGAGGATATCTTGTTTGAAGAGGTTGGGAAGAAGGAAGGATTGACATGGTNCATTAATCGACCACATGTTATCTTTGGGTTTTCCCCTTACAGCTTAATGAACTTGATNGGCACGCTTTGCGTTTACGCTGCTATATGCAAGCACGAGGGTGTTCCATTGAGGTTCCCCGGCACGAAAGCTGCTTGGGAGTGTTACTCAGTGGCTTCAGATGCTGATTTGATTGCGGAGCAACACATTTGGGGTGCAGTGGANCCTCAAGCGAAGAACGAGGCCTTTAATTGCAGCAACGGGGATGTTTACAAGTGGAAGCATTTGTGGAAGGTGTTGGCAGAAAGTTTTGGGATTGAGGAATATGGGTTTGACGAGGAGGGTAATTCGGAGTTGCTGAGGTTGTCGGAGATGATGAAGGATAAGGGTGGTGTGTGGGAGGAGATTGTGAGGGAGAATGGGTTGCAGAACACTAAGCTTGAGGAGGTGGGGGATTGGTGGTTTGCGGAAATTATGTTGGGAGTGGAGAATGTGTTGGACAGCATGAACAAGGCCAAAGAGCATGGGTTTTTGGGATTTAGGAATTCTGAGAAATCGTTCAGAACTTGGATCGAGAAGACAAAAGCTTATAAGATTGTGCCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00229	220038	221944	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000229s00018890.1	PF13460.1	NAD_binding_10	22	202	1.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.567
SRR1783600	control	40.298
SRR1783602	moderate drought stress	73.025
SRR1811619	moderate drought stress	80.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.131
DRR006520	Root Summer glycyrrhizin high producing strain	51.120
DRR006521	Root Winter glycyrrhizin high producing strain	31.750
DRR006522	Root Winter glycyrrhizin high producing strain	30.896
DRR006523	Root Summer glycyrrhizin low producing strain	70.888
DRR006524	Root Summer glycyrrhizin low producing strain	70.704
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.235
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.676
SRR2868004	Drought Stress (root)	41.470
SRR2967015	Control (root)	23.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.625
SRR9715740	Leaf	115.455
SRR9715741	Leaf	62.721
SRR9715739	Root	55.226
SRR9715742	Root	48.861
SRR9715743	Root	47.911

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	234.831
SRR8749028	MeJA induced 9h	338.457
SRR8749029	MeJA induced 9h	414.364
SRR8749030	Uninduced	1094.795
SRR8749031	Uninduced	778.728
SRR8749032	Uninduced	598.579

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.874
SRR8400027	Control - Root	69.534