Gene detail

Gene detail information of Glyur000229s00018889

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27700.1	2.00E-57	Syntaxin/t-SNARE family protein
NR	KHN45272.1	2.42E-169	hypothetical protein glysoja_047922 [Glycine soja]
Swissprot	tr\|Q946Y7\|SYP61_ARATH	4.00E-07	Syntaxin-61
trEMBL	tr\|I1MXJ2\|I1MXJ2_SOYBN	2.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G35500.1}

Sequence

Transcript Sequence

>Glyur000229s00018889.1
TTTTTAATTGGTGACCCACCTTCGTTGTGTAACTCATTTTATTAATTGGTGATTGCATTGCAACACAGATTTCCTCAGTTAGGGTTTATATATCAGGTTCATCATTGTTCCCAATTTTTTTCAATATCATTATTATTGTGATCGTTATTCGAAATTTGAAGCGACCCATATTTATTCATGGCGTCGAGTTTCGACCGGTGGGAAAAAGATCCCTTCTTTAACGCCGCTGAAGAAGTTCAAGAATCTGCAGACAGAATGGAATCTACATATAGGACATGGATACATGCCACGAAAGACACATCCAGCATGTGGAATACTGATGAACTCCAAAGAGATCTAGTTACTGCCCTTGGCACTGCTAAATGGCAGTTGGAAGAGTTTGAACGGGCGGTCGGGTCAAGTTATAGCAAAAGCTCTAGTGAGGAAGCAAGAAATAGGCACCAAGATTTCATCACTGCTNTTAAGGATAAGATAACGAAAGTTGAGCATTCGTTGAATGAATCGATCCCTCCCGGCGGTAGTGCATCTCCGCCTTGGGTGCGTATGAATGAAGGAGAGAAAAATGAGCTTGCTCTGTTTCTTTCAGGAATGCCTGCAACTGAAGGCAACAATCCTTCTTGGAGTAATAGTACTAGGGACAGTGAAAATCCACAATTACGTGATAAAGATTCGGTCATTAATTGGTCAAAGGATTTTCATGTTTCATCTCGGTTGGGTGAAGTGCCTAAGGAGGAGATATCACATGGGCATCGTAGGACAGCTAGTGCTAGTGCTGATATTGGTGCTTGGAAAATTTCGGTTTCTGAGGATCCGCAGCAATGGAGTTCCTCCAGTGGTTCTTCTGGTCCAATGCATAAGGTGCCCAGTTTATCAGGATTTCTTAGTTCCGTGGAATCCGTCTCGAAATTGAAGTGGCCTAGGAATGGTTATAGAAAGCTGAAAGTAGTGGATCATCATAAAGACGCCGATGCTGCAATACTTCCAACAGCTGAATTGAATAGGGGCAACAATAATGCAAGCTATGAAAGAAGTAAAAGTAACCTTGATAGTTCTGATAAAAGCTATGACAAGCAACTCTATGGATGGTGCGGTGCTATTCAAAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGTCACCCTGTTCAAATAACTATTTGGATTATTATTCTCCTTTGCTTGATTGAATTTGAGGGATTTTACCTTATTGCCTTATCATCANCACCACCACCATATGGCCTTCTTGCTAATGATTTGCTTTTGCTTCTCCTCATAACAAAGTTTTAGTTACATTTTGCACAATGTAGAAGGAAGATTCAAGATCCGTGATCTATCAGCTTGTAGCTGGCGGCAGTATTAGGGACAAACAAGTTTTTTTTTTAACTCAAGTTCATAAGACCTAGGTTAGTTTTCTGGTTCTTACTTAACCTATGGGATTACTAGNTAGTCTACCTCAGCATTTCCTCAATTTTTTGTTTTTTTTTCCTTTCTATTCAATCTCATTTTTTCCCTGCCCATTTCAAAATTGTTCACGAAGAGCTCTCTGCTGTACTATATAGTAAGGTGGATAAAGGGGTATTGGCTTATTAGATGTTATTTACTTGTAATGTGTATCATACATGTCTTTTGAAGCTAGAGTCGTGTATTTGTACCAAAGCTATTAGTTTAGNATCTGCAAATTCAAGATGATATTTCATTATTCTTTGTCCAATTGTTATTAACAGACTACTTTAAGCAAAACAAACATCAATCAACAGGAGTAATTGGGGATAGGTGTAGGACCCACATGATTTAATGAGACCCACATGAATTGCACCAAATCACAGAGAAACGGTTGGGAAAAGACTAAGTATTGAACTCCTCTTATTATTGACACAACTCACAACATTATTTTTTTTGGTCAAATATACTCCTAACTCACAACATAAACATTGAAACATAGAAAATAACTCTTCACAATTTTTCATGGTCCTTTATTTACGCCAATAAAAACATACAAGAAGAGGCCCCCTCATCATCACAATCCAAATTAAGTAGTCCAACTCCAAATCATCATCACGGCACAATCTTATAAGCTTTTGTCTTCTCGATCCAAGTTCTGAACGATTTCTCAGAATTCCTAAATCCCAAAAACCCATGCTCTTTGGCCTTGTTCATGCTGTCCAACACATTCTCCACTCCCAACATAATTTCCGCAAACCACCAATCCCCCACCTCCTCAAGCTTAGTGTTCTGCAACCCATTCTCCCTCACAATCTCCTCCCACACACCACCCTTATCCTTCATCATCTCCGACAACCTCAGCAACTCCGAATTACCCTCCTCGTCAAACCCATATTCCTCAATCCCAAAACTTTCTGCCAACACCTTCCACAAATGCTTCCACTTGTAAACATCCCCGTTGCTGCAATTAAAGGCCTCGTTCTTCGCTTGAGGNTCCACTGCACCCCAAATGTGTTGCTCCGCAATCAAATCAGCATCTGAAGCCACTGAGTAACACTCCCAAGCAGCTTTCGTGCCGGGGAACCTCAATGGAACACCCTCGTGCTTGCATATAGCAGCGTAAACGCAAAGCGTGCCNATCAAGTTCATTAAGCTGTAAGGGGAAAACCCAAAGATAACATGTGGTCGATTAATGNACCATGTCAATCCTTCCTTCTTCCCAACCTGAATGAATAAATAATTAAATTAATTACATCGTTCCATGATATTAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00229	216917	220699	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0016192 vesicle-mediated transport

GO:0048193 Golgi vesicle transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000229s00018889.1	PF09177.6	Syntaxin-6_N	11	103	1.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.963
SRR1783600	control	16.293
SRR1783602	moderate drought stress	27.935
SRR1811619	moderate drought stress	24.757

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.147
DRR006520	Root Summer glycyrrhizin high producing strain	21.202
DRR006521	Root Winter glycyrrhizin high producing strain	13.043
DRR006522	Root Winter glycyrrhizin high producing strain	12.597
DRR006523	Root Summer glycyrrhizin low producing strain	30.011
DRR006524	Root Summer glycyrrhizin low producing strain	29.697
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.848
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.782

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.652
SRR2868004	Drought Stress (root)	23.730
SRR2967015	Control (root)	12.925

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.613
SRR9715740	Leaf	41.390
SRR9715741	Leaf	31.295
SRR9715739	Root	16.707
SRR9715742	Root	12.676
SRR9715743	Root	14.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.811
SRR8749028	MeJA induced 9h	122.279
SRR8749029	MeJA induced 9h	164.923
SRR8749030	Uninduced	416.578
SRR8749031	Uninduced	483.374
SRR8749032	Uninduced	158.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.274
SRR8400027	Control - Root	42.732