Gene detail

Gene detail information of Glyur000229s00018884

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24230.1	6.00E-27	acyl-CoA-binding domain 3
NR	XP_004499010.1	3.71E-88	PREDICTED: acyl-CoA-binding domain-containing protein 3-like [Cicer arietinum]
COG	YP_004098617.1	6.00E-09	acyl-coA-binding protein ACBP [Intrasporangium calvum DSM 43043]
Swissprot	tr\|Q9STX1\|ACBP3_ARATH	5.00E-41	Acyl-CoA-binding domain-containing protein 3 (Precursor)
trEMBL	tr\|A0A072VPF6\|A0A072VPF6_MEDTR	5.00E-84	Acyl-CoA-binding domain protein {ECO:0000313\|EMBL:KEH40020.1}

Sequence

Transcript Sequence

>Glyur000229s00018884.1
GTGAAAAAAACCGCAGAATATGCTTTGCTCTGTTCTCCAGATTATCCTTTCCTCTTTTTCCTCCCCTTTCTTCTTCCCCCCTTCAGTTCAGTTCCTTCCTTCTAATCATTTCCTTCCTAAATTCTCTCATTAATTATCATCGCTCCAAAACAACCACAACCACCATTTAATCCCGATCCTAATACTAATCCTCTTCTTTAAACCTTCCCCTCTTACTTCACGAAGCGTTTTGGTGGGATTTTTCATTTCAACTTTTTTCAAGCGTGAGTGATGATGATGATGGAGCTTGTAACCGCGAGTGATCTTTTNGTCACTGCGTCCCTGGCGCTTCTTCTCTCTTTCCTCGTCGCCAAGCTTGTCTCCTTCGCCATGACCGAGACAAACAATCACGTAACCGGCGAACCGGTGGCTCCGGTTCTCCAAGCGGTTCAGACCACCCAAACCGAAAGCCGGGTCGATTTCATTACTCCGGTCCAAGTTGCAACAACGACGAAGGTAGAAGAAACCGGAAATGACACAGGAGACGCTACCACGGTTGAGTCCGATTCCAACAACGTTGTTTTCGAGTCGCCGGAGAAGTCAGACATTGCCGCCGTTGATGTGACGGAAGAGAAAACCGCCGCCGTGCGAGACGACGGCGATTCTGCGGAAAAGAGTAGGAACGTGGAGTGTGTGGAAGAAGAAGAAGAAATCACCGAAGAACCTTCCACTGAGACGGTGGTTTCTGCTATGGAGAGCGAAACAAAGGAAAGGGATGAAGATGAGGAGGAGAACGATGATGATGATGATTGGGAATGGGAAGGGATTGAGAGGAGTGAGTTGGAAAAGGTGTTTGTGTCGGCTACGGAATTCGTTGCTGTGAAAGGGTGTGGCGGTGACGGTGGTGGTGATGTGCAGATGGAGTTGTATGGGCTTCACAGGGTTGCAACGGAAGGGCCTTGTCGTGAACCTCAACCAATGCCACTCAAACTCTCCGCACGTGCCAAGTGGAATGCTTGGCAAAAGCTGGGGAACATGAGTCCAGAGGTTGCTATGGAGCGATATGTCAGCCTTCTTTCAGATAAAGTTCCTGGATGGATGGAAGATACTTCTGCTGGAATGGCTGAACACGAACCGACGGTGGGGGAACATGAACAAGAGTCTGGTGCCCAGGACACTAGCCCGCTTACAGAGTCAGATTTGGAAAACAATGTAAGATTTTGAAATCATTCAGACTGATACATTGAGGAAGAATCAATAGCTTAGATAATATTGGAACATGTTTGAAAAGACATTATCTGATGACCAAGTCCCAATCTAGACCCGTGGTATTTTTTTCCGTCTAAATACTGTCATCATGATACTTGCATAATAATGAGGAGCCAAAATAGAAAATCATGGTAGAAAATTGTTGAAGGGTTTTTTAAGAATTCATGAAGTGTTGGAGACTTATCTTCATCTTGTAAATGTGGGATTGGTTTCTGAAGCTATCATACCACCATTGCTATGTTTACTTAAGTCACTTCCTTACTCTTCTAAAGCTTAAAGNAGAGATAGGTGGGCACGTGGATCATCCACACTTAAGATCAAAGGATTCTTGCAATGGGGAAGAAGATATAAATATAAAATCATTCTTAGGCCTCTACCTGACATCTTAAACTTATAGAATAGTTAGTTGTCAGAAACTGCAAATGACTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00229	196953	200267	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0000062 fatty-acyl-CoA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000229s00018884.1	PF00887.14	ACBP	186	266	3.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.202
SRR1783600	control	4.175
SRR1783602	moderate drought stress	3.635
SRR1811619	moderate drought stress	3.737

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.835
DRR006520	Root Summer glycyrrhizin high producing strain	10.718
DRR006521	Root Winter glycyrrhizin high producing strain	6.490
DRR006522	Root Winter glycyrrhizin high producing strain	6.262
DRR006523	Root Summer glycyrrhizin low producing strain	10.666
DRR006524	Root Summer glycyrrhizin low producing strain	10.311
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.715

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.207
SRR2868004	Drought Stress (root)	29.683
SRR2967015	Control (root)	58.717

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.433
SRR9715740	Leaf	1.768
SRR9715741	Leaf	3.156
SRR9715739	Root	6.516
SRR9715742	Root	4.801
SRR9715743	Root	5.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.447
SRR8749028	MeJA induced 9h	26.256
SRR8749029	MeJA induced 9h	35.582
SRR8749030	Uninduced	13.501
SRR8749031	Uninduced	71.726
SRR8749032	Uninduced	58.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.277
SRR8400027	Control - Root	31.496