Gene detail information of Glyur000229s00018879 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49890.1 | 2.00E-100 | Family of unknown function (DUF566) |
| NR | XP_004499008.1 | 0 | PREDICTED: uncharacterized protein LOC101489089 [Cicer arietinum] |
| Swissprot | tr|Q8GXD9|SCO3_ARATH | 1.00E-133 | Protein SNOWY COTYLEDON 3 |
| trEMBL | tr|V7CVF5|V7CVF5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32896.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00229 | 160776 | 165442 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000229s00018879.1 | PF04484.7 | DUF566 | 271 | 593 | 7.10E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.369 |
| SRR1783600 | control | 5.449 |
| SRR1783602 | moderate drought stress | 4.415 |
| SRR1811619 | moderate drought stress | 4.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.710 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.608 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.893 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.745 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.184 |
| SRR2868004 | Drought Stress (root) | 13.579 |
| SRR2967015 | Control (root) | 14.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.498 |
| SRR9715740 | Leaf | 18.657 |
| SRR9715741 | Leaf | 29.686 |
| SRR9715739 | Root | 17.004 |
| SRR9715742 | Root | 36.984 |
| SRR9715743 | Root | 33.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.643 |
| SRR8749028 | MeJA induced 9h | 16.299 |
| SRR8749029 | MeJA induced 9h | 7.923 |
| SRR8749030 | Uninduced | 17.921 |
| SRR8749031 | Uninduced | 3.008 |
| SRR8749032 | Uninduced | 1.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.555 |
| SRR8400027 | Control - Root | 14.004 |