Gene detail information of Glyur000229s00018878 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27730.1 | 3.00E-44 | salt tolerance zinc finger |
| NR | NP_001235613.1 | 1.13E-100 | scof-1 protein [Glycine max] |
| Swissprot | tr|Q96289|ZAT10_ARATH | 3.00E-62 | Zinc finger protein ZAT10 |
| trEMBL | tr|P93166|P93166_SOYBN | 4.00E-101 | SCOF-1 {ECO:0000313|EMBL:AAB39638.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00229 | 148904 | 149617 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000229s00018878.1 | PF13912.1 | zf-C2H2_6 | 88 | 112 | 5.70E-10 |
| Glyur000229s00018878.1 | PF13912.1 | zf-C2H2_6 | 142 | 166 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.940 |
| SRR1783600 | control | 3.318 |
| SRR1783602 | moderate drought stress | 2.855 |
| SRR1811619 | moderate drought stress | 2.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 335.522 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 330.745 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.009 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 576.923 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 583.285 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 122.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 122.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.567 |
| SRR2868004 | Drought Stress (root) | 202.619 |
| SRR2967015 | Control (root) | 599.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1614.631 |
| SRR9715740 | Leaf | 1535.023 |
| SRR9715741 | Leaf | 1671.242 |
| SRR9715739 | Root | 2467.155 |
| SRR9715742 | Root | 2272.267 |
| SRR9715743 | Root | 2133.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 992.900 |
| SRR8749028 | MeJA induced 9h | 710.340 |
| SRR8749029 | MeJA induced 9h | 806.195 |
| SRR8749030 | Uninduced | 633.113 |
| SRR8749031 | Uninduced | 166.171 |
| SRR8749032 | Uninduced | 767.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 102.546 |
| SRR8400027 | Control - Root | 134.964 |