Gene detail information of Glyur000229s00018870 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06300.1 | 1.00E-08 | Putative lysine decarboxylase family protein |
| NR | XP_002274747.1 | 9.69E-11 | PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 isoform X2 [Vitis vinifera] |
| Swissprot | tr|Q8GW29|LOG7_ARATH | 5.00E-10 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 |
| trEMBL | tr|D7T324|D7T324_VITVI | 4.00E-11 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI24905.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00229 | 92130 | 96373 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.656 |
| SRR1783600 | control | 1.972 |
| SRR1783602 | moderate drought stress | 3.637 |
| SRR1811619 | moderate drought stress | 3.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.897 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.892 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.958 |
| SRR2868004 | Drought Stress (root) | 15.409 |
| SRR2967015 | Control (root) | 16.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.002 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.864 |
| SRR8749028 | MeJA induced 9h | 11.819 |
| SRR8749029 | MeJA induced 9h | 12.959 |
| SRR8749030 | Uninduced | 21.400 |
| SRR8749031 | Uninduced | 19.458 |
| SRR8749032 | Uninduced | 22.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.271 |
| SRR8400027 | Control - Root | 0.213 |