Gene detail

Gene detail information of Glyur000229s00018867

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67500.1	2.00E-77	voltage dependent anion channel 2
NR	XP_004498999.1	3.52E-169	PREDICTED: mitochondrial outer membrane protein porin 2-like [Cicer arietinum]
Swissprot	tr\|Q9FJX3\|VDAC2_ARATH	6.00E-108	Mitochondrial outer membrane protein porin 2
trEMBL	tr\|I1J462\|I1J462_SOYBN	1.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0092S00210.1}

Sequence

Transcript Sequence

>Glyur000229s00018867.1
CTTTTTTCTTGTTTTCGCGTGCAGCAAAAATGTCAGCCAAAGGACCTGGATTCTTCTCCGATATCGGCAAAAAAGGCAGAGACATCCTTACTAAGGATTACAACTCCGATCAAAGGTTCACCATCTCCTCCTCCACCAACTCGGGTCTCGACTTGAACTCGACGTTGGCGAAGAGTAGAGGACTCTCCTCTGGAGTTGTGGCTGTGGAATTTAAGCACAAGAACAAAACGGTTCATGTCAAAGCTGATACTGATTCAAGTGTGTTGACAACATTTACTGTAACAGATTTAGCGCCTTCCTCGAAAACCATTGCCTCTATACGAATACCTGATTACAACTCTGGCAAGGTGCTGAGAATGTTTTTGATTGAGGTTCAGTACCTTCATGATCATGCGGCTTTTACTACTGCTGTTGGTTTAAATCGCAACCCTGCTATTGATTTTTCTGNTACAATTGGTACTCCCAGCATTGCCTTTGGAGCAGAAACCAGCTACTCCACAAGTGTTGGCAAGTTTACAAAGTACAATGCTGGTTTGTGTTTAAAGATGCCAAGTTCCAATGCTTCAGTAATTTTAGCTGACAAGGGAGACTCTATGAAGGTATCATACTTGCACGAGCTAGAAAGATTGAATGGGGGAGGTGTTGTGGGAGAGATTAGCAGAAAGTTCTCTACAAATGAGAACACATTGACGGTTGGATGTTCATATGTGGTTGATCCTCAGACAACTGTGAAGGCGAAGCTGAACAACCATGGCAATCTTGGGGCCTTATTGCNGCATGAGCTTACACATAAGTCATTCATGACAATGTCTGGTGCCTTTGAAACAAAGGATTTGGAAAAGAGTCCCAAGTTTGGTTTCTCGCTCTTGCTCAAGCCTTAACGCATATATAAATAGGGACAATATGCTAAGTTATACTGTCACATGCTCCTTCAATTAAGTTGAATGTAAGGAAGAAAGTTTAGGAAATNGATATAGAATATTGAAGTCTTGATTTTTTGTCCCTTTTATCTTCAGATGATTGATTGGACTTCTGGAGATTAGAAAGGCATTGTCATTGGGAATGAATTTTAAATTATTGGTAATATCTGATTCAAAACTAGTTAGGTGAAGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00229	78923	81012	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006820 anion transport

GO:0044070 regulation of anion transport

GO:0055085 transmembrane transport

cellular_component
GO:0005741 mitochondrial outer membrane

molecular_function
GO:0008308 voltage-gated anion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000229s00018867.1	PF01459.17	Porin_3	6	276	2.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.604
SRR1783600	control	4.561
SRR1783602	moderate drought stress	5.223
SRR1811619	moderate drought stress	5.041

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.491
DRR006520	Root Summer glycyrrhizin high producing strain	9.474
DRR006521	Root Winter glycyrrhizin high producing strain	4.933
DRR006522	Root Winter glycyrrhizin high producing strain	4.915
DRR006523	Root Summer glycyrrhizin low producing strain	12.566
DRR006524	Root Summer glycyrrhizin low producing strain	13.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.974
SRR2868004	Drought Stress (root)	8.924
SRR2967015	Control (root)	8.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.428
SRR9715740	Leaf	9.506
SRR9715741	Leaf	8.237
SRR9715739	Root	1.755
SRR9715742	Root	7.333
SRR9715743	Root	4.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.854
SRR8749028	MeJA induced 9h	22.590
SRR8749029	MeJA induced 9h	31.758
SRR8749030	Uninduced	5.231
SRR8749031	Uninduced	4.721
SRR8749032	Uninduced	9.552

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.174
SRR8400027	Control - Root	7.957