Gene detail

Gene detail information of Glyur000229s00018866

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01400.1	7.00E-127	ARM repeat superfamily protein
NR	AES59330.2	0	armadillo/beta-catenin-like repeat protein [Medicago truncatula]
Swissprot	tr\|O22193\|PUB4_ARATH	3.00E-82	U-box domain-containing protein 4
trEMBL	tr\|G7ICC9\|G7ICC9_MEDTR	0	Armadillo/beta-catenin-like repeat protein {ECO:0000313\|EMBL:AES59330.2}

Sequence

Transcript Sequence

>Glyur000229s00018866.1
CAGTACTTTCCATCTTTTTTTTATTTTTCAAATTTTTTTTAGACTAATTATTTAAAAACGCACGCGTTTTTAAAGAGGGAGAACCTCTTTTGACCAAAAAAAAAAAAGAGGGAGAGCCTTCGCACGTGCTTTGCGGGCTTGTAATTTGGTACCGTGAGTAATCTATATGTGTACGTGTCATTCCCACACCCCAATGCTTGGATACACATGTAAAAATGTTATCCCCCTCTCCCATCCCTTATATTTCGCCTTTCCCATCCTCCCNTTCTCTCGTCTCCACGCCCTCAACCCGAACCCGAACAATCGAACCGGATCCTAATAACGCCGTTACAGTGATGGGAACGGAGGGTTACACTTACATGGGACGCAGTTTCAGCGAACTCAGCATCAACGACGATTCCTCTTCTTCCGCTTTCAGCGACTGCAATAGCGACAGATCCGGCGAGTTNGCCACCGCTTCTTCCCAATCCCGGAGACTCCTCATCGCCTGCGCCTCCGAGAATTCCGATGAGCTCATCCGTCAACTCGTCTCCGATCTCCACTCCTCTTCCGTCGACGACCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCCAAGAACAAGCCGGAGAATCGCATCAGAATCGCAAAAGCAGGCGCAATCAAACCGTTAATTTCTCTCATTTGCTCGCAAGACCTCCAGCTTCAAGAATACGGCGTCACAGCAATTTTGAACCTCTCACTCTGCGACGAGAACAAAGAGCTCATAGCCTCTTCGGGAGCGATTAAGCCTCTGGTTCGAGCACTCAACTCCGGGACTGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTTCGGCTCTCGCAGGTGGAGGAGAACAAGGCGGCGATCGGGAGGTCCGGCGCCATTCCTCTATTGGTGAACCTTCTAGAGAGCGGCGGCATCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAGGGAGAACAAGATCAGGGCGGTGAAGGCGGGGATCATGAAGGTTCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTTGTGAGCGTTCTGGTGTCGGTGCCGGAGGCGAAGGCGGCGCTGGTGGAGGAAGGTGGCGTTCCGGTGCTGGTGGAGATCGTTGAGGTTGGGTCGCAGAGACAGAAAGAAATCGCGGCGGTTATTCTGTTACAACTATGCGAGGACAGCGTGGCTTATCGAACCATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGACTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCTGAGAAACTAATTGAGCTTCTGCGGCAACCAAGATCTGGACGCACATCAGAAGTGGTTGCATAAACCAGCAATCATTCATTCTATGGTCCCAACTCCGCACGTGCGTGAAAGGGTAACATGACACCTCGGTTCAAAAACAATGAATTGGTTAACGACATCGTGCGTCCTCCAAGAGAGACAGAGAGAACAACAACTTTGTAAATATATCTTCGTAACGGAGAAGCTTTGTAAAGTTTGTGGTATAAATGAATGATACGAGTTTGTGTTTGGTTTGCTTTTTCGGGCTTTATTTAAAGAATAATGCACTCCCAAGTCGATCCCACCAATACCACTGGTCTTTTTTTTTAAGTTTATTTTATGAACTGTGAATGTGATGATTGGTGATATCTCTTTTGGGCCCTTCTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00229	70737	72952	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000229s00018866.1	PF00514.18	Arm	131	169	8.40E-07
Glyur000229s00018866.1	PF00514.18	Arm	171	210	6.80E-07
Glyur000229s00018866.1	PF00514.18	Arm	214	251	6.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.101
SRR1783600	control	26.625
SRR1783602	moderate drought stress	22.698
SRR1811619	moderate drought stress	23.248

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	110.822
DRR006520	Root Summer glycyrrhizin high producing strain	109.244
DRR006521	Root Winter glycyrrhizin high producing strain	30.266
DRR006522	Root Winter glycyrrhizin high producing strain	29.533
DRR006523	Root Summer glycyrrhizin low producing strain	103.623
DRR006524	Root Summer glycyrrhizin low producing strain	104.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	123.939
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.272
SRR2868004	Drought Stress (root)	79.384
SRR2967015	Control (root)	122.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	313.801
SRR9715740	Leaf	191.469
SRR9715741	Leaf	342.164
SRR9715739	Root	265.862
SRR9715742	Root	278.453
SRR9715743	Root	265.354

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	210.034
SRR8749028	MeJA induced 9h	105.555
SRR8749029	MeJA induced 9h	170.290
SRR8749030	Uninduced	80.533
SRR8749031	Uninduced	44.492
SRR8749032	Uninduced	96.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.776
SRR8400027	Control - Root	67.958