Gene detail

Gene detail information of Glyur000228s00011918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32650.1	6.00E-174	potassium channel in Arabidopsis thaliana 3
NR	XP_003603500.1	0	Potassium channel [Medicago truncatula]
COG	YP_724331.1	2.00E-35	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|P92960\|KAT3_ARATH	0	Potassium channel KAT3
trEMBL	tr\|G7JC98\|G7JC98_MEDTR	0	Potassium channel KAT3 protein {ECO:0000313\|EMBL:AES73751.1}

Sequence

Transcript Sequence

>Glyur000228s00011918.1
ATGTCGTTGCCATCTCTAGCTACAAGAAGACGTTCAAGTGGAGAAATAAGGAACTTGGCCTCAATTTCCAGCAGCCTCTTACCAGCATTTGGCACTACCCCTGTTGAAGTGTACTCTGCATGGGCATCTCCGTTTGAGCTAGCTTTCAGAGAATTATCAATTGGGAAGCTGATGATCGTTGATCTTATTGTTGACGCCTTCTTTGCAGTTGATATAATCCTAACTTTCTTTGTGGCTTACTTGGATACATCAACTTATTTCCTCGTTGATGACCATAGGAAGATTGCTATCAGGTACGTCAAAAAGTTACACTTTCCCATGGATCTAGCTTCCACTCTGCCATTTCAGCAGATATACCAAATTCTAGCACGTAAACCACACGAAAGAACAGAGTTCTTTGGTTTGCTAAACATGCTTAGACTCTGGCGATTGAGGCGTGTTACGCTGGCCTTTTATGCACAGAATTTTACCATATGCTCTGCCTTTTTTATCACTAAAACTGTCAAACCATTTTCCAGGCTAGAGAAAGACATACGAATCAGCTATTCGGTAACACGATTTTGTAAACTTTTATGCGTTACGCTATTTGCGGTGCACTTCGCAGGCTGCATGTATTTTTGGTTGGCTGTTCATCACAAAAACCCCGAAAACACATGGATCGGGAAGCAGATACATGATTTTAAACATAGGAGCGTTGGGTTGGGTTACACTTATTCCATGTACTGGTCTATTGTAACCCTTACCACNGTTGGCTATGGAGATTTACATGCAGAAAATACAACAGAGAAGGTTGTCAATATTTTTTATATGCTGTTTAACATCGGCCTCACTGCATATATAATCGGAAACATGACAAATCTGGTGGTTCATAGCTCTGTCCGAACCTTTGCCATGGAGCAAATGTTGGCACACATACAACTGAAGTTTAAGACCGCAGAGCTACAGCAAGAAGAAGTGCTGCAGGACCTGCCGAAAGCAATTAGAGCCAGTATTGCTCAGCATCTTTTCCACAACGTAGTTGAAAAAACATATTTATTTAAAGGAGTCTCCGATGATTTTATCACCCAGCTGGTATCAGATATGAAAGCAGAATACTACCCGTCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCTGGATCAGTGGATGTGTTGATAAACAAGAATGGGTCCGAACAGCTTTTGTTCAAACTAGAACCTGGAGGCATGGTAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTATACAGTGAGAAGTAGAAGGCTCTCCCAGGTTATACGAATCAATCATCACCATTTCAAGCAGATGGTGCAGCCATTTAGTGACGATGGGAAGGCAATCATCAGCAACTTTATTCAGTTTTTGAAAGGCCTACAAGGCGAGGAGCTGAAAGAAATACCACATCAACTAACACAAAATGAGGGCACGAACAGTGAAGTTTCAAATTATCAGGAAGATGATCTATACGAAGAAGGAAGAACAGAAAATTCCAATCCACTGCCAAGCTTAGTCCCCATTAGAGTCAAAATCCACGGACATCATCCCAATGAAAACAAAATGGAAAACAGAACCACACCGAAGCTCATTATTCTCCCGAATTCAGTCGAAGATCTTTTCAGAGTCGCAGAGGAAAGGTTTGGAAAAAGAGGAAGCAAAATTCTTATGGTTGACGGCTCAGAAGTAGAAGAACTAAGCGCCTTAAGAGAGGATGACGANTTATACATCCTCTAATAATCATCACACCAAACAGAGATTAACCAGACGCTGGTCTTTTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00228	163542	177606	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000228s00011918.1	PF00520.26	Ion_trans	59	284	4.00E-17
Glyur000228s00011918.1	PF00027.24	cNMP_binding	369	449	1.80E-13
Glyur000228s00011918.1	PF11834.3	DUF3354	515	586	1.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.150
SRR1783600	control	1.129
SRR1783602	moderate drought stress	2.437
SRR1811619	moderate drought stress	2.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.485
DRR006520	Root Summer glycyrrhizin high producing strain	1.594
DRR006521	Root Winter glycyrrhizin high producing strain	0.558
DRR006522	Root Winter glycyrrhizin high producing strain	0.565
DRR006523	Root Summer glycyrrhizin low producing strain	0.827
DRR006524	Root Summer glycyrrhizin low producing strain	0.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.079
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.148
SRR2868004	Drought Stress (root)	43.528
SRR2967015	Control (root)	28.967

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.898
SRR9715740	Leaf	6.495
SRR9715741	Leaf	5.330
SRR9715739	Root	0.442
SRR9715742	Root	2.816
SRR9715743	Root	2.196

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.133
SRR8749028	MeJA induced 9h	51.279
SRR8749029	MeJA induced 9h	37.348
SRR8749030	Uninduced	23.840
SRR8749031	Uninduced	37.582
SRR8749032	Uninduced	16.667

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.228
SRR8400027	Control - Root	9.654