Gene detail

Gene detail information of Glyur000228s00011906

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31120.1	0	SHK1 binding protein 1
NR	XP_003603517.1	0	Protein arginine N-methyltransferase [Medicago truncatula]
COG	YP_003265314.1	8.00E-14	histone-arginine N-methyltransferase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8GWT4\|ANM15_ARATH	0	Protein arginine N-methyltransferase 1.5
trEMBL	tr\|G7JCB5\|G7JCB5_MEDTR	0	Protein arginine N-methyltransferase {ECO:0000256\|PIRNR:PIRNR015894}

Sequence

Transcript Sequence

>Glyur000228s00011906.1
GTCGGTCCTTGTCTTAATCTAAACTTTTCAATTACCAAAAAATGGGGGAAAATAAGCAAAAAGGCCACTCTGACGTCTCCGGTTTTGGGCTTAGAAAGCCCACCCGTTTGGAAAGCCGAAAACCCTACCCTAGTGAGTGAGTAGTAGTGGCGTTATGAGCTTCTTCTACAAAACCCCACCAAAACCCTCTGCTGGAGCTCGCTACTAATCATAGTGTTAGCTTAGCTTCGACGACGCGCTCGAGCTTAAGAAGAGTTGGAAGCAAAAGATGCCTCTAGGAGAAAGAGGAGGGGATAAGAGCGAATCCCGGTACTGTGGTGTAGAGACTGAGTTCAGCGATGACATGCCTCAACTCCTCGCTCTCAATCTCTCCTCTGCAGGCTTCGATTTCGTCGTTGCTCCTCTGATGGATCCTTCCTACCGGCCAAGTTTAGTGCAAAAGGATGGTTTATATGGTGCTCTGCCATTTGCTGGNTCAGACTTGGTCTTGAGCCCATCCCAGTGGAGTAGTCATGTAGTGGGAAAAATTAGCTCATGGATAGATTTGGATTCGGAAGATGAAACCCTAAGGATAGATTCTGAAACCACTCTTAAGCAAGAAATAGCTTGGGCTTCTCATCTCTCATTACAGGCTTGCCTGCTTCCTGCCCCTAAAGGAACTTTTTGTGCTAATTATGCTCGCTGTGTGAATCAAATCTTACAGGGCCTGAGTAATATGCAGTTGTGGCTTAGGATTTCNTTGGTCAAGCCTGATGACGACTCTATGGATGCAGACTCTGTTACTTCGGTTGACTCCTGGGAAACATGGAATTCTTTTCGTCTGCTATGTGAGCATCATAGTCAACTGTCAGTTGCACTTGATATTCTGAGTACTCTCCCTTCAGCAAATTCACTAGGGCAATGGTTTGGGGAGTCTGTTAGAGCAGCTATAGTAAATACTGATTCCTTTTTAACTAATGCTCGTGGATATCCTTGCCTCTCCAAGCGCCACCAGAGGTTAATTGCTGGTTTTTTCGACCATTCTATACAGATCATTATATCTGGAAATTCTATTCATCCAAAAGCAAGTGTAGAGACAAATGATTCTCATAATCACTCTGTTGTAGATTCCCAAAGACATCCACTGCGTCCATATCTGGACTATGTTGGATATCTCTACCAAAAAATGGATCCTCTCCCTGAGCAAGAACGTTTTGAGCCTCTGATGGATAATTTAGAGGCTCAAACGTACGAGACTTTTGAAAAAGATGCAATGAAATACATTCAGTACCAAAGAGCAGTTAGTAAAGCATTGCTGGACAGGATTCCTGATGAAGAGGCATCTGCTAGAACCCTTGTATTGATGGTTGTCGGAGCAGGACGTGGGCCTCTTGTGCGGGCATCATTACAGGCTGCGGAAGAAACTGGGCGGAAGCTAAAAGTGTACGCTGTTGAAAAGAATCCTAATGCAGTTGTTACTCTTCATGCATTAATTAAATTAGAGGGATGGGAGGATACTGTTACTATAGTTTCAAGCGACATGCGTAATTGGAATGCCCCTGAAAAGGCAGACATATTGGTTAGTGAATTGCTTGGTTCTTTTGGTGACAATGAACTATCTCCTGAGTGCCTTGATGGAGCTCAGAGGTTTCTAAAGCCAAATGGAATTTCAATACCATCTTCGTACACAAGTTTCCTCCAACCAGTGACAGCATCAAAGTTATATAATGATGTTAAGGCACATAAAGATCTTGTACACTTCGAAACTGCTTATGTTGTGAAAATACATAATGCAGCTCGACTTGCACCATGTCAACCTGTTTTTACATTTACGCATCCAAAAGCCTCTGATACAGAAAGCAATCAGCGCTATAAAAAGTTGCATTTTGTGATTCCTAAGGACACTGGGTCAGCAATGATACATGGATTTGCTGGCTACTTCGATGCAACTCTTTACAAGGATGTGCATCTTGGGATTGAGCCTTCAACAGCTACACCGAACATGTTTGCAATATTTTTCCCACTGAGGACACCTATTTGTGTGAAACCGGGTTCTACGCTTGAAGTACAATTCTGGCGCTGTTGTGGTTCTACAAAGGTTTGGTATGAGTGGTGTGTTACGTCTCCCTCTACGTCTCCAATTCACAACTGTAATGGACGTTCGTATTGGGTTGGGCTTTAGTGTTTGGTATGAGTTTTTCTGTGGTATATTTCAAGTCAAGGAAAAATATGTTGTACAATAAGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00228	82993	91669	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02516	PRMT5, HSL7	EC:2.1.1.320	RNA transport	map03013
			MAPK signaling pathway - yeast	map04011
			Cell cycle - yeast	map04111

Gene Ontology

biological_process

GO:0006479 protein methylation

GO:0035246 peptidyl-arginine N-methylation

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000228s00011906.1	PF05185.11	PRMT5	173	612	4.70E-171

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.662
SRR1783600	control	15.833
SRR1783602	moderate drought stress	17.573
SRR1811619	moderate drought stress	17.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.265
DRR006520	Root Summer glycyrrhizin high producing strain	28.888
DRR006521	Root Winter glycyrrhizin high producing strain	12.856
DRR006522	Root Winter glycyrrhizin high producing strain	12.283
DRR006523	Root Summer glycyrrhizin low producing strain	23.977
DRR006524	Root Summer glycyrrhizin low producing strain	23.646
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.044
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.279

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.760
SRR2868004	Drought Stress (root)	18.040
SRR2967015	Control (root)	18.033

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.006
SRR9715740	Leaf	11.620
SRR9715741	Leaf	6.348
SRR9715739	Root	13.163
SRR9715742	Root	23.956
SRR9715743	Root	20.591

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.148
SRR8749028	MeJA induced 9h	25.862
SRR8749029	MeJA induced 9h	28.337
SRR8749030	Uninduced	1.163
SRR8749031	Uninduced	0.960
SRR8749032	Uninduced	2.521

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.067
SRR8400027	Control - Root	26.441