Gene detail information of Glyur000228s00011902 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24850.1 | 3.00E-163 | cryptochrome 3 |
| NR | XP_004501253.1 | 0 | PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Cicer arietinum] |
| COG | YP_003888547.1 | 2.00E-125 | DASH family cryptochrome [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q38JU2|CRYD_SOLLC | 0 | Cryptochrome DASH, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|G7JCC1|G7JCC1_MEDTR | 0 | Cryptochrome, DASH family protein {ECO:0000313|EMBL:AES73774.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00228 | 61698 | 67415 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000228s00011902.1 | PF00875.13 | DNA_photolyase | 100 | 136 | 6.10E-08 |
| Glyur000228s00011902.1 | PF03441.9 | FAD_binding_7 | 246 | 473 | 2.80E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.414 |
| SRR1783600 | control | 2.564 |
| SRR1783602 | moderate drought stress | 1.763 |
| SRR1811619 | moderate drought stress | 1.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.412 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.545 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.935 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.835 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.043 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.240 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.560 |
| SRR2868004 | Drought Stress (root) | 5.904 |
| SRR2967015 | Control (root) | 5.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.378 |
| SRR9715740 | Leaf | 19.776 |
| SRR9715741 | Leaf | 11.868 |
| SRR9715739 | Root | 0.308 |
| SRR9715742 | Root | 1.780 |
| SRR9715743 | Root | 1.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.914 |
| SRR8749028 | MeJA induced 9h | 2.204 |
| SRR8749029 | MeJA induced 9h | 1.474 |
| SRR8749030 | Uninduced | 0.475 |
| SRR8749031 | Uninduced | 0.396 |
| SRR8749032 | Uninduced | 0.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.400 |
| SRR8400027 | Control - Root | 4.603 |