Gene detail information of Glyur000228s00011897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24620.1 | 2.00E-55 | EF hand calcium-binding protein family |
| NR | XP_004503360.1 | 1.03E-113 | PREDICTED: probable calcium-binding protein CML25-like [Cicer arietinum] |
| COG | YP_001866396.1 | 5.00E-25 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9FYK2|CML25_ARATH | 2.00E-70 | Probable calcium-binding protein CML25 |
| trEMBL | tr|K7KRI8|K7KRI8_SOYBN | 5.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34640.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00228 | 44795 | 45370 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000228s00011897.1 | PF13499.1 | EF-hand_7 | 40 | 98 | 2.00E-14 |
| Glyur000228s00011897.1 | PF13499.1 | EF-hand_7 | 113 | 173 | 3.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.977 |
| SRR1783600 | control | 6.750 |
| SRR1783602 | moderate drought stress | 4.107 |
| SRR1811619 | moderate drought stress | 3.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.557 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.336 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.196 |
| SRR2868004 | Drought Stress (root) | 7.637 |
| SRR2967015 | Control (root) | 7.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.021 |
| SRR9715740 | Leaf | 1.180 |
| SRR9715741 | Leaf | 3.902 |
| SRR9715739 | Root | 10.637 |
| SRR9715742 | Root | 9.974 |
| SRR9715743 | Root | 8.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.723 |
| SRR8749028 | MeJA induced 9h | 2.302 |
| SRR8749029 | MeJA induced 9h | 2.431 |
| SRR8749030 | Uninduced | 1.122 |
| SRR8749031 | Uninduced | 1.330 |
| SRR8749032 | Uninduced | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.821 |
| SRR8400027 | Control - Root | 9.697 |