Gene detail information of Glyur000228s00011892 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24490.2 | 5.00E-65 | replicon protein A2 |
| NR | XP_004498588.1 | 1.78E-150 | PREDICTED: replication protein A 32 kDa subunit A-like [Cicer arietinum] |
| Swissprot | tr|Q9ZQ19|RFA2A_ARATH | 2.00E-81 | Replication protein A 32 kDa subunit A |
| trEMBL | tr|V7CVJ8|V7CVJ8_PHAVU | 1.00E-148 | Uncharacterized protein {ECO:0000313|EMBL:ESW33295.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00228 | 21431 | 28575 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000228s00011892.1 | PF01336.20 | tRNA_anti-codon | 70 | 140 | 8.10E-10 |
| Glyur000228s00011892.1 | PF08784.6 | RPA_C | 181 | 268 | 5.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.599 |
| SRR1783600 | control | 3.426 |
| SRR1783602 | moderate drought stress | 2.524 |
| SRR1811619 | moderate drought stress | 2.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.736 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.788 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.077 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.188 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.443 |
| SRR2868004 | Drought Stress (root) | 1.551 |
| SRR2967015 | Control (root) | 1.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.539 |
| SRR9715740 | Leaf | 0.944 |
| SRR9715741 | Leaf | 0.870 |
| SRR9715739 | Root | 0.561 |
| SRR9715742 | Root | 0.951 |
| SRR9715743 | Root | 1.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.023 |
| SRR8749028 | MeJA induced 9h | 3.291 |
| SRR8749029 | MeJA induced 9h | 2.997 |
| SRR8749030 | Uninduced | 1.045 |
| SRR8749031 | Uninduced | 2.366 |
| SRR8749032 | Uninduced | 0.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.702 |
| SRR8400027 | Control - Root | 5.093 |