Gene detail

Gene detail information of Glyur000227s00015146.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22580.1	1.00E-159	Exostosin family protein
NR	XP_003609665.1	0	Xyloglucan galactosyltransferase KATAMARI1-like protein [Medicago truncatula]
Swissprot	tr\|Q8H038\|KATAM_ORYSJ	2.00E-82	Xyloglucan galactosyltransferase KATAMARI1 homolog
trEMBL	tr\|G7JLG7\|G7JLG7_MEDTR	0	Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313\|EMBL:AES91862.1}

Sequence

Transcript Sequence

>Glyur000227s00015146.1
ATGGCATCGCGGTCACACACCCACGTCCTGATCACTCTCCTGTTGTTGTTCTCCCTGTCAGATCCAGGCGCGTGCGAAGCAACCGACAACAGTTTCAATTCGGAATCATCATCATCGGAGTGCGAGAAGCGATGGATCCACATAAGGAAGCTTCCGGCAATGTTCAACCTGGATCTGCTAGCGAATTGTTCAGAATACTCATACATCTTAGAGGACCTTTGCCCGTACCTAGCGAACCACGGTCTGGGCCAGAAAACCCACAACCGTTCCCACAGTTGGTACCGAACCGACCCATCCATGCTTGAACTCATGTTCCACCGAAGAATGCTCGAGTACCCGTGCCTCACCGAAGACCCAACCGCCGCAGACGCCATCTACCTCCCTTACTACGCCGGCTTCGACGCACTACGGTACCTCTACGGCCCCGAATACAACTCCAGCGCCGAACACGGCCTCCACCTCTTCCACTTCCTCCAACACGACACCCCCGAAATCTGGAACCGCCATTCGGGTCACGACCACTTCCTCGTCATGGCCCGACCCGCTTGGGATTTCTCGCAGCCCTTGGAAATCAACGACCCTCCCCTTTGGGGCACTTCCTTTCTCGAGTTGCCGCACTTCTACAACGTAACCGCTTTGACCCTCGAGGCACGTGCCTGGCCCTGGCAGGAACATGCCGTTCCTTACCCGACGTCGTTTCATCCACCGAATCTCGACTTGTTGGACTCATGGATCCAGCGTGTTCGCCGCTCCAAGCGCTCAGCGCTTGCACTTTTCGCCGGCGGCGGGGGTTTCTCCGCCACGCCGAATATCCGGCGGAGTATAAGAATGGAGTGTGACAACGGCACCGGGAATTACCCTTCCGGTTATGATAAGCTCTGTGATACTGTTGATTGTTCCAATGGGGTTTGTGAGCATGACCCTATTAGGTTCATGAGGCCAATGTTGCANGCGAGTTTCTGTTTGCAGCCTCCTGGGGACACTCCAACTCGAAGGTCAACCTTTGATAGCATTCTCGCTGGATGCATACCTGTGTTCTTTGAGGAGCTTTCTGCGAAATCGCAGTACTCGTGGCATTTGCCGGAGAAGGAGTTTGAGGGTTTCTCTGTTTTTATACCCAAGGAGGAGGTGGTGTTCAGGGGGTTGAAGATTCTTGATGTGTTGCAGCGGATACCTAGGGGTAGGGTTAGGAGAATGAGGGAGAAAGTGTTGGAGTTGATACCCAGGGTCGTGTACAGGAAGCATAATAGCTCTCCCGCTCTCAGAACCAAGAAGGATGCTTTTGATTTAACAATTGAGGGTACATTGGATAAGATTCGATCCAGGCTTCAGGAACTTGATGTGGTTCTGTTCAATTTGCCACTCCAACATCACGGGTTTCTTCTTCTTACAAGAATGCCAGAGATGCACCCAAGCACCAAATTTGGACTGCATGGTCACCAGCATTTGGTTGTGTGTGAAGTTCTGAACACGAAGTTGGACATTAGCGTTGAGAATCAGTGGACACAAATTCAGCTTTGCGAGTTTGGACTAAGGCAATTTCTGAAGTCGCTGAAATCATGCTCAGATTGGGTATTTTCCACTCTAGATTTTGCTGCAGTCACTTCCCTTTCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	228413	232696	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015146.1	PF03016.10	Exostosin	41	391	3.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.777
SRR1783600	control	25.903
SRR1783602	moderate drought stress	17.862
SRR1811619	moderate drought stress	18.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.913
DRR006520	Root Summer glycyrrhizin high producing strain	18.727
DRR006521	Root Winter glycyrrhizin high producing strain	7.010
DRR006522	Root Winter glycyrrhizin high producing strain	6.588
DRR006523	Root Summer glycyrrhizin low producing strain	14.401
DRR006524	Root Summer glycyrrhizin low producing strain	14.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.957
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.045
SRR2868004	Drought Stress (root)	18.853
SRR2967015	Control (root)	20.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.080
SRR9715740	Leaf	6.049
SRR9715741	Leaf	5.947
SRR9715739	Root	12.104
SRR9715742	Root	16.250
SRR9715743	Root	14.499

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.555
SRR8749028	MeJA induced 9h	7.784
SRR8749029	MeJA induced 9h	4.809
SRR8749030	Uninduced	4.682
SRR8749031	Uninduced	3.868
SRR8749032	Uninduced	1.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.235
SRR8400027	Control - Root	21.692