Gene detail information of Glyur000227s00015144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16560.1 | 1.00E-152 | Protein phosphatase 2C family protein |
| NR | KHN02972.1 | 0 | Hypothetical protein glysoja_009838 [Glycine soja] |
| Swissprot | tr|Q9LUS8|P2C40_ARATH | 0 | Probable protein phosphatase 2C 40 |
| trEMBL | tr|I1KMZ8|I1KMZ8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 214924 | 219477 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015144.1 | PF00481.16 | PP2C | 333 | 550 | 7.20E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.991 |
| SRR1783600 | control | 8.161 |
| SRR1783602 | moderate drought stress | 9.703 |
| SRR1811619 | moderate drought stress | 9.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.134 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.047 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.558 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.900 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.277 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.117 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.390 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.826 |
| SRR2868004 | Drought Stress (root) | 26.134 |
| SRR2967015 | Control (root) | 20.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.159 |
| SRR9715740 | Leaf | 14.092 |
| SRR9715741 | Leaf | 13.854 |
| SRR9715739 | Root | 30.245 |
| SRR9715742 | Root | 60.481 |
| SRR9715743 | Root | 50.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.898 |
| SRR8749028 | MeJA induced 9h | 29.098 |
| SRR8749029 | MeJA induced 9h | 12.106 |
| SRR8749030 | Uninduced | 16.732 |
| SRR8749031 | Uninduced | 3.043 |
| SRR8749032 | Uninduced | 1.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.399 |
| SRR8400027 | Control - Root | 27.593 |