Gene detail

Gene detail information of Glyur000227s00015140

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27700.1	2.00E-37	Ribosomal protein S21e
NR	XP_004143089.1	2.82E-50	PREDICTED: 40S ribosomal protein S21-2-like [Cucumis sativus]
Swissprot	tr\|Q3E902\|RS212_ARATH	4.00E-48	40S ribosomal protein S21-2
trEMBL	tr\|A0A0A0KHD3\|A0A0A0KHD3_CUCSA	1.00E-50	Uncharacterized protein {ECO:0000313\|EMBL:KGN47181.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	206226	207899	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015140.1	PF01249.13	Ribosomal_S21e	1	78	4.80E-37
Glyur000227s00015140.2	PF01249.13	Ribosomal_S21e	1	78	4.80E-37

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	4.151
SRR1783600	control	4.375
SRR1783602	moderate drought stress	7.377
SRR1811619	moderate drought stress	7.506

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.694
DRR006520	Root Summer glycyrrhizin high producing strain	12.857
DRR006521	Root Winter glycyrrhizin high producing strain	4.221
DRR006522	Root Winter glycyrrhizin high producing strain	4.448
DRR006523	Root Summer glycyrrhizin low producing strain	12.909
DRR006524	Root Summer glycyrrhizin low producing strain	13.239
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.148

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.235
SRR2868004	Drought Stress (root)	40.401
SRR2967015	Control (root)	38.610

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.397
SRR9715740	Leaf	29.891
SRR9715741	Leaf	14.642
SRR9715739	Root	9.330
SRR9715742	Root	12.727
SRR9715743	Root	13.300

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.788
SRR8749028	MeJA induced 9h	25.675
SRR8749029	MeJA induced 9h	42.145
SRR8749030	Uninduced	5.616
SRR8749031	Uninduced	2.947
SRR8749032	Uninduced	4.541

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.120
SRR8400027	Control - Root	12.880