Gene detail information of Glyur000227s00015138 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15800.1 | 6.00E-35 | ralf-like 33 |
| NR | XP_004508218.1 | 4.03E-67 | PREDICTED: rapid alkalinization factor 23-like [Cicer arietinum] |
| Swissprot | tr|Q8L9P8|RLF33_ARATH | 1.00E-43 | Protein RALF-like 33 (Precursor) |
| trEMBL | tr|G7JLH2|G7JLH2_MEDTR | 7.00E-67 | RALF {ECO:0000313|EMBL:AES91867.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 199512 | 199898 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015138.1 | PF05498.6 | RALF | 67 | 128 | 4.50E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 178.634 |
| SRR1783600 | control | 177.702 |
| SRR1783602 | moderate drought stress | 169.396 |
| SRR1811619 | moderate drought stress | 168.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 251.988 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 252.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.396 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 504.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 512.511 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 124.541 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 124.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 210.888 |
| SRR2868004 | Drought Stress (root) | 156.196 |
| SRR2967015 | Control (root) | 208.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 800.642 |
| SRR9715740 | Leaf | 742.463 |
| SRR9715741 | Leaf | 635.331 |
| SRR9715739 | Root | 705.179 |
| SRR9715742 | Root | 795.756 |
| SRR9715743 | Root | 721.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 524.039 |
| SRR8749028 | MeJA induced 9h | 381.057 |
| SRR8749029 | MeJA induced 9h | 295.880 |
| SRR8749030 | Uninduced | 142.069 |
| SRR8749031 | Uninduced | 12.632 |
| SRR8749032 | Uninduced | 64.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 245.907 |
| SRR8400027 | Control - Root | 439.292 |