Gene detail

Gene detail information of Glyur000227s00015137.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02500.1	UDP-xylosyltransferase 2
NR	XP_004508217.1	PREDICTED: putative glycosyltransferase 2-like [Cicer arietinum]
Swissprot	tr\|Q9LZJ3\|XXT1_ARATH	Xyloglucan 6-xylosyltransferase 1
trEMBL	tr\|G7JLH4\|G7JLH4_MEDTR	Xyloglucan xylosyltransferase {ECO:0000313\|EMBL:AES91869.1}

Sequence

Transcript Sequence

>Glyur000227s00015137.1
ATGCTGGACCGGTGCCTGGGAACTCGCCGACTCCGTCAGATCCAGCGCGCGTGCCGCCGCGGATCCCTCACCTTCCTCTGCCTCTTCCTCACCGTCGTCGTCCTCCGCGGCACCATCGGCGCCGGCAAGTTCGGTACCCCCGAACAGGACTTCAACGAGATCCGCCACCAACTCTACTCTCGCGGCCGGCGCGTCGAGCCCCACCGCGTCCTCGAAGAAGTCCAACCCGACAACAACCAAAACAACAACAACGAGAACAACTACGCCACCTTCGATCTGTCGAAGATCCTGAAAGACGAAGGCGGCGACGACGATAAGCGCGATCCAAACACGCCTTACACGCTTGGCCCCAAGATCTCTGACTGGGACGAACAGCGTGCGCGTTGGCTCCGACAAAACCCGGATTACCCAAATTTCATCGGACCCAACAAGCCACGTGTCCTTCTGGTTACCGGGTCATCGCCCAAACCCTGCGAGAACCCGGTTGGGGACCATTACCTGTTGAAGTCAATTAAGAACAAGATTGACTATTGCAGGCTTCATGGGATTGAGATTTTCTACAACATGGCTCTCCTCGATGCTGAGATGGCAGGGTTTTGGGCAAAACTCCCTCTGATTCGGAAGCTGTTGCTGTCTCACCCTGAGGTTGAGTTTCTCTGGTGGATGGACAGTGACGCCATGTTCACCGACATGGCTTTTGAGGTTCCCTGGGAGAGGTATAAAGACAGCAACTTCGTGATGCACGGGTGGAATGAAATGGTGTACGATGAGAAGAATTGGATTGGTTTGAACACGGGTAGTTTCTTGTTGAGGAATTGTCAGTGGTCGCTTGATATTCTTGATGCTTGGGCACCAATGGGACCCAAAGGGAAGATCAGAGATGAAGCTGGGAAAGTTCTTACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGATGATCAATCTGCTATGGTGTATTTGTTGGCTACTGGGAAGGAGCAATGGGGGGAAAAGGTTTACCTTGAGAATGCTTACTACTTGCACGGGTATTGGGGGATTTTGGTGGATAGGTATGAGGAGATGATCGAGAATTACCACCCTGGTCTTGGTGACCATAGGTGGCCACTTGTGACTCACTTTGTGGGGTGTAAGCCTTGTGGGAAATTTGGGGATTACCCTGTTGAGAGGTGCTTGAAACAGATGGATAGGGCCTACAATTTTGGGGATAACCAGATCTTGCAGATGTATGGGTTTACACATAAGTCACTTGCTAGTCGCAGGGTGAAGAGGGTGAGGAATGAGTCTAGCAATCCTCTTGATGTTAAGGATGAGCTTGGGTTGCTTCATCCTGCTTTCAAAGCTATCAAGTTGCCAACTTCTTCTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	194713	196083	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT34

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016758 transferase activity, transferring hexosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015137.1	PF05637.7	Glyco_transf_34	144	383	4.80E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	136.689
SRR1783600	control	137.367
SRR1783602	moderate drought stress	90.954
SRR1811619	moderate drought stress	90.131

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.974
DRR006520	Root Summer glycyrrhizin high producing strain	87.278
DRR006521	Root Winter glycyrrhizin high producing strain	52.468
DRR006522	Root Winter glycyrrhizin high producing strain	51.160
DRR006523	Root Summer glycyrrhizin low producing strain	164.267
DRR006524	Root Summer glycyrrhizin low producing strain	159.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.571
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	107.145
SRR2868004	Drought Stress (root)	87.248
SRR2967015	Control (root)	87.993

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.088
SRR9715740	Leaf	51.283
SRR9715741	Leaf	54.129
SRR9715739	Root	221.319
SRR9715742	Root	150.533
SRR9715743	Root	148.159

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.093
SRR8749028	MeJA induced 9h	61.792
SRR8749029	MeJA induced 9h	46.002
SRR8749030	Uninduced	29.209
SRR8749031	Uninduced	9.240
SRR8749032	Uninduced	13.297

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.153
SRR8400027	Control - Root	110.278