Gene detail information of Glyur000227s00015132.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15880.1 | 6.00E-105 | Cysteine proteinases superfamily protein |
| NR | XP_006584024.1 | 0 | PREDICTED: ubiquitin-like-specific protease ESD4-like isoform X1 [Glycine max] |
| Swissprot | tr|Q94F30|ESD4_ARATH | 9.00E-152 | Ubiquitin-like-specific protease ESD4 |
| trEMBL | tr|I1KMY1|I1KMY1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37640.7} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 152120 | 156987 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ULP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015132.1 | PF02902.14 | Peptidase_C48 | 318 | 499 | 2.60E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.467 |
| SRR1783600 | control | 0.433 |
| SRR1783602 | moderate drought stress | 0.615 |
| SRR1811619 | moderate drought stress | 0.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.007 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.947 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.871 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.025 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.293 |
| SRR2868004 | Drought Stress (root) | 4.866 |
| SRR2967015 | Control (root) | 6.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.386 |
| SRR9715740 | Leaf | 1.745 |
| SRR9715741 | Leaf | 1.198 |
| SRR9715739 | Root | 0.306 |
| SRR9715742 | Root | 0.665 |
| SRR9715743 | Root | 0.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.156 |
| SRR8749028 | MeJA induced 9h | 4.406 |
| SRR8749029 | MeJA induced 9h | 2.408 |
| SRR8749030 | Uninduced | 1.927 |
| SRR8749031 | Uninduced | 0.907 |
| SRR8749032 | Uninduced | 0.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.756 |
| SRR8400027 | Control - Root | 3.465 |