Gene detail

Gene detail information of Glyur000227s00015131

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16640.1	1.00E-74	translationally controlled tumor protein
NR	XP_009401514.1	4.09E-106	PREDICTED: translationally-controlled tumor protein homolog [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5J907\|TCTP_ELAGV	4.00E-106	Translationally-controlled tumor protein homolog
trEMBL	tr\|M0RZY4\|M0RZY4_MUSAM	2.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P14760_001}

Sequence

Transcript Sequence

>Glyur000227s00015131.1
TCNCTTACTTCTCTCGTCGCTCGCTCCTTCCTTCAAAGTCGAAAGCAGCTTTTTAAGCCGAGCCCAGCCGAGCCGAGAGAATCTCCGCAAACATGTTGGTTTACCAGGACCTCCTCACAGGTGATGAGCTTCTCTCGGACTCCTTCCNATACAAGGAAATTGAGAATGGAATGCTGTGGGAAGTTGATGGAAAGTGGGTTGTTAAAGGAGCAGTTGATGTAGACATTGGTGCAAACCCTTCTGCTGAAGGTGGAGAAGAAGAGGGTGTTGATGACCAAGCTGTTAAGGTTGTTGACATTGTTGACACATTTAGACTTCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTCTTGCCTACATGAAGAGGTATATCAAGTTGTTGACACCCAAACTTGACGAAGAGAAACAAGGGCTATTTAAAAAGCACATTGAGGGAGCAACTAAATTCTTGCTCTCCAAGATCAGTGATCTTCAGTTTTTTGTTGGGGAGAGCATGCATGATGATGGTACCTTGGTCTTTGCCTACTACAAGGATGGTGCTACNGATCCCACATTTCTTTACTTCGCATTTGCNTTGAAGGAGGTCAAGTGCTAAGCGACATACCATGCTAGTGAGTTTGATGTTCTGTACTCTGTAGTTCTAGCATCATTTCATCTAGTTTTTCTTTTACATTTTACCTGGGAAATTCCCTTGGTGTTTTGGTTTNCTGGTATTATTCGAATGATTAAACAATCTGACAGTGTTATTAAGGGCCGGGGAGGCTTTATGTGCTGCTTCATTCCCACCAAATTTTCTTTATCGATGGATCTGACATCATGTTTANTTTATTACTATTCTTCGTTTGCTCTAAAAGGCCATTGTCTCTTAAAGTCTTGTTGGGCTTACGTACTTTTATGGGTTTCTTAACCTTATTTTGGGCATTTTCTAAATACACATACACAGTTTTCTAACCACACATACACAACAGATCAAAAGCCTAAAATACTCTCATCGCATTTCGTTATCGTGTGGAACTATTAGTTCNGCACGTGTTATTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	146700	149032	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015131.1	PF00838.12	TCTP	1	164	3.20E-65
Glyur000227s00015131.2	PF00838.12	TCTP	77	209	3.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	672.330
SRR1783600	control	674.054
SRR1783602	moderate drought stress	665.479
SRR1811619	moderate drought stress	662.885

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	446.559
DRR006520	Root Summer glycyrrhizin high producing strain	442.292
DRR006521	Root Winter glycyrrhizin high producing strain	219.103
DRR006522	Root Winter glycyrrhizin high producing strain	211.971
DRR006523	Root Summer glycyrrhizin low producing strain	528.538
DRR006524	Root Summer glycyrrhizin low producing strain	519.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	111.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	111.531

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	328.504
SRR2868004	Drought Stress (root)	246.695
SRR2967015	Control (root)	284.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	220.939
SRR9715740	Leaf	214.945
SRR9715741	Leaf	277.888
SRR9715739	Root	1000.314
SRR9715742	Root	650.611
SRR9715743	Root	718.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	468.184
SRR8749028	MeJA induced 9h	223.961
SRR8749029	MeJA induced 9h	368.602
SRR8749030	Uninduced	233.909
SRR8749031	Uninduced	189.371
SRR8749032	Uninduced	295.149

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	400.519
SRR8400027	Control - Root	430.898