Gene detail

Gene detail information of Glyur000227s00015128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62830.2	3.00E-176	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004508205.1	0	PREDICTED: UDP-glucuronic acid decarboxylase 2-like [Cicer arietinum]
COG	YP_007108422.1	2.00E-160	NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9LZI2\|UXS2_ARATH	0	UDP-glucuronic acid decarboxylase 2
trEMBL	tr\|G7JLI8\|G7JLI8_MEDTR	0	UDP-glucuronic acid decarboxylase-like protein {ECO:0000313\|EMBL:AES91883.1}

Sequence

Transcript Sequence

>Glyur000227s00015128.1
ATGAGCTCTGAGCTAATTCACAGAAACCAAACAAGAGAATCCGAGAATCACACCACAGATTCATCGCATCGTCCAAATTCTCCCCCAAGATCATCGAGGAACATGATTCTACAGCGAGCCCCTTTCCTCCTCATCGGCATCGCCATCTCCACTCTCTTCTTCCACTTCCTCCCTTCTCAATCCTCTGCTCCTCAAACTCACCACCATGATCACTCCTCGTCGTTCGAGTTGGCTCTCCCGACTCGGCGGGTCCTCATGGAGGAACCCGGCACGANGACGACCCGGCAAGCCGAAGAGGTGAAAGGAAGGAAGCAAAGGGTCCCACTGGCGGTGTCGCTGAGAGTGAAGAAGCAGAAGAGGGTGCTGGTGACCGGTGGTGCCGGTTTCGTGGGAAGCCACCTGGTGGACCGTCTGATGGAAAGAGGGGACANCGTGATCGTGGTGGACAACTTCTTCACGGGAAGGAAAGAGAACGTGCTGCATCACATGGGAAACCCCAACTTCGAACTCATTCGCCACGACGTCGTTGAACCCATCCTTCTCGAAGTTGACCAGATCTACCACTTGGCCTGCCCTGCTTCCCCTGTTCACTACAAGTTCAACCCCACCAATGTGGTGGGAACGCTCAACATGTTGGGATTGGCAAAGAGAGTGGGTGCACGTTTTTTGCTGACCAGTACCAGTGAGGTTTACGGTGATCCACTTCAACACCCTCAGGCTGAGACCTACTGGGGCAACGTTAATCCCATTGGTGTAAGAAGCTGTTATGATGAGGGGAAGCGCACTGCGGAGACCTTGGCCATGGACTACCACAGAGGCGCTGGCATTGAGGTGAGGATTGCTCGAATCTTCAACACATATGGACCAAGAATGTGCCTTGATGATGGCCGTGTGGTCAGTAACTTCGTTGCTCAGGCATTGAGGAAGGAACCATTGACTGTTTATGGCGATGGAAAACAGACAAGAAGCTTCCAATATGTCTCTGACTTGGTAGAGGGCCTNATGCGGCTGATGGAAGGTGAGCATGTTGGGCCTTTCAATCTTGGCAACCCTGGTGAATTCACCATGCTTGAGCTTGCTCAGGTGGTACAAGAGACCATAGACCCAAATGCGAAGATAGAGTTTAGACCCAACACAGAGGATGACCCACATAAGAGGAAGCCTGACATCTCCAAAGCGAAAGAGCTTCTTGGGTGGCAGCCATCTGTGTCCCTCCGTGAGGGACTTCCTCTAATGGTCTCTGATTTCCGGCAAAGACTATTCGGTGACTCTAAAGCCAATGGGGCCAAAGGTGCATCTGCTGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	121075	123316	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08678	UXS1, uxs	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015128.1	PF01370.16	Epimerase	121	349	5.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.273
SRR1783600	control	0.403
SRR1783602	moderate drought stress	1.654
SRR1811619	moderate drought stress	1.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.380
DRR006520	Root Summer glycyrrhizin high producing strain	0.417
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.573

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.499
SRR2868004	Drought Stress (root)	7.288
SRR2967015	Control (root)	9.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.427
SRR9715740	Leaf	0.048
SRR9715741	Leaf	0.561
SRR9715739	Root	0.152
SRR9715742	Root	0.804
SRR9715743	Root	0.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	0.441
SRR8749029	MeJA induced 9h	0.494
SRR8749030	Uninduced	0.538
SRR8749031	Uninduced	0.408
SRR8749032	Uninduced	0.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.244
SRR8400027	Control - Root	2.140