Gene detail information of Glyur000227s00015126 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02820.1 | 6.00E-11 | Late embryogenesis abundant 3 (LEA3) family protein |
| NR | AFU81504.1 | 4.68E-42 | LEA5-2.1, partial [Vigna unguiculata] |
| Swissprot | tr|Q39644|LEA5_CITSI | 7.00E-23 | Late embryogenesis abundant protein Lea5 |
| trEMBL | tr|K4JRE6|K4JRE6_VIGUN | 2.00E-42 | Late embryogenesis abundant {ECO:0000313|EMBL:AGI03025.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00227 | 104438 | 107136 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000227s00015126.1 | PF03242.8 | LEA_3 | 1 | 100 | 2.70E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 898.084 |
| SRR1783600 | control | 906.699 |
| SRR1783602 | moderate drought stress | 7719.048 |
| SRR1811619 | moderate drought stress | 7667.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5879.134 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5781.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24292.594 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23345.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6920.783 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6834.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.690 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 343.437 |
| SRR2868004 | Drought Stress (root) | 1337.028 |
| SRR2967015 | Control (root) | 1197.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.209 |
| SRR9715740 | Leaf | 7.269 |
| SRR9715741 | Leaf | 42.712 |
| SRR9715739 | Root | 1989.454 |
| SRR9715742 | Root | 2197.672 |
| SRR9715743 | Root | 2002.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 692.931 |
| SRR8749028 | MeJA induced 9h | 2899.340 |
| SRR8749029 | MeJA induced 9h | 847.068 |
| SRR8749030 | Uninduced | 1781.546 |
| SRR8749031 | Uninduced | 671.066 |
| SRR8749032 | Uninduced | 3299.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1047.075 |
| SRR8400027 | Control - Root | 772.229 |