Gene detail

Gene detail information of Glyur000227s00015123

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15930.1	3.00E-40	Dynein light chain type 1 family protein
NR	XP_003609697.1	5.21E-73	Dynein light chain 1 cytoplasmic-like protein [Medicago truncatula]
Swissprot	tr\|Q39580\|DYL1_CHLRE	1.00E-43	Dynein 8 kDa light chain, flagellar outer arm
trEMBL	tr\|G7JLJ9\|G7JLJ9_MEDTR	2.00E-73	Uncharacterized protein {ECO:0000313\|EMBL:AFK47173.1}

Sequence

Transcript Sequence

>Glyur000227s00015123.1
GTGAAAACGGAAAGGTAAAAACAACAATTCCCTTCCCAGTTCCCACCCACTTGTGACTTGTCCTCGTCCATCGGGTGAAATCTAATCTAATACTGTAANAACTAAGCTAACAACAAAAACAGAGAGATGTAATAAGCGCAACAACACAAGTCGTTCTTCTTCCTTTATTTATTTTTTTTTCCTTCTTCTTCTTCATATCACACAGATCATATCATATATGCCTTCTTCACACACAAACACAGGCACCCAGAGAAGAGAGATGAACGAGGAGGAGGCGAAGAAGAGCGTTGGAGGAGGAGGAGCTGCTGCTACTCTAATGGCGAAACCCCACTCCGAAGATCGAAAGCCACTGGTTCTTCCACCGCAACCTGCCTCTGCTGCCTCTCCCGCTCCCCCTACTCCAAAGAAAGTCATCATCAAGAGTGCCGATATGCTCCCCGACATGCAAAAAGAGGCCGTTGACATCGCCGTCTCCGCGTTTGAGAAGCACAACGTAGAGAAAGATGTCGCCGAGACCATAAAGAAGGAGTTCGACAGGAGGCACGGACCCACCTGGCATTGCATCGTTGGTCGCAATTTTGGTTCGTATGTGACTCATGAAACAAATCACTTTGTTTATTTCTATTTGGATCAGAAAGCGGTTTTACTTTTCAAGTCTGGCTAGCCATATTCTGATGGTAACAAAAAAGTTGACAGCTACGAGAATTGTCTTGTGATTATGCTGCTATATTAACTCTTGTATGTATTAAATCCACTGNCGCACAAACTCTTTGCAGGACATTCTTGTGCTTGTATATCTAATTTCATGCAAACTGGTTCTCAAGTTTGGATATGAATCAAATTCTTGATCTTTCTGCTTCCCTTTGTGTTCCATTCCATTCGTGTGTTTTGGGAATTCTTTTTTCTTATTCCATTAAGTTTGACTTCATTCCACATACAGTATCTTGTCAAATATTTGTGGTTTTCCAGATCTTAAAAGCTTTGTATGCACNGTGTCAAAATCAACATGGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	73666	77063	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007017 microtubule-based process

cellular_component
GO:0005875 microtubule associated complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015123.1	PF01221.13	Dynein_light	63	148	2.50E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.990
SRR1783600	control	87.369
SRR1783602	moderate drought stress	76.240
SRR1811619	moderate drought stress	75.661

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.164
DRR006520	Root Summer glycyrrhizin high producing strain	44.118
DRR006521	Root Winter glycyrrhizin high producing strain	38.426
DRR006522	Root Winter glycyrrhizin high producing strain	37.512
DRR006523	Root Summer glycyrrhizin low producing strain	41.811
DRR006524	Root Summer glycyrrhizin low producing strain	41.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.319
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.637

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.032
SRR2868004	Drought Stress (root)	48.409
SRR2967015	Control (root)	48.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.804
SRR9715740	Leaf	25.756
SRR9715741	Leaf	21.788
SRR9715739	Root	24.840
SRR9715742	Root	16.470
SRR9715743	Root	16.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.907
SRR8749028	MeJA induced 9h	16.745
SRR8749029	MeJA induced 9h	23.128
SRR8749030	Uninduced	9.697
SRR8749031	Uninduced	7.773
SRR8749032	Uninduced	8.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.138
SRR8400027	Control - Root	46.806