Gene detail

Gene detail information of Glyur000227s00015118.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06850.2	5.00E-39	2-oxoacid dehydrogenases acyltransferase family protein
NR	KEH32295.1	2.53E-111	2-oxoacid dehydrogenase acyltransferase family protein [Medicago truncatula]
COG	YP_004466925.1	1.00E-18	dihydrolipoamide acetyltransferase [Alteromonas sp. SN2]
Swissprot	tr\|Q9M7Z1\|ODB2_ARATH	5.00E-47	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|A0A072V2G4\|A0A072V2G4_MEDTR	9.00E-112	2-oxoacid dehydrogenase acyltransferase family protein {ECO:0000313\|EMBL:KEH32295.1}

Sequence

Transcript Sequence

>Glyur000227s00015118.1
GTCCCTGAATTACAAGCAATGAATGATGAATCCAGCACTGCATTATTACGACTCAGCAACTTGTCAGCATGCAATCACTACCCGCTCCAAATCCAACGCCCCCATCCCTTCCATCCTAGTACAACTAGAAAAGCACCTACTAATCTATTTGGGGTTCCTTGTTTCACTTCCAAACGCATCTCTCTCCTTTTCAAATCTCCCCCTTCCAACTCTCACACAACAGAGACAGAAGAAAAAACAGAAACTCATCCCTTTTTGTCTCGCTCGGGCGCTGCAAGATGCTGAGCAGCCGGATATGGCAGAGGAGAGCTTTGATCTACGTCCGCCGATTGTTCCGTCCCTCTGTTTCGGCTTCCCTTGGTTCTGAGTGTTCCTCCCCTTACCCTTCTTCCTCTGCTTCATCTTCGCTGTCTTTTTGGTTCGCCAATGCTGATGCGAGTTTCAAATTTCCTCGTGTTGAGAGATATAGCTTTTCTACTCAACCCGTGGTGGACATTCCTGCGGGCAAGATGGTTGACGTGCCGTTGGCACAGACCGGTGAAGGGATTGCAGAATGTGAACTTCTCAAATGGTATGTCCAAGAGGGGGATTATGTTGAAGACTTTCAACCGCTTTGTGAAGTTCAAAGTGATAAAGCTACCATAGAAATTACAAGTCGCTACAAAGGAAAAGTTTCTAACATTCTCTACGTTCCTGGTGATATTGTAAAGGTTGGAGCAACCCTTTTAAAGATATCAGTTGATGACTCTGCAAATCCTTCAACAACTTTTGGTGATTCAGAAAATGCAAAGTCACCTGATTCTGATCAGCTATTAGTTAATGAGTCTGTATCTACTACAGTAGCTTTTGGCAATTCAGAAAATACGAAGTCTCTAGATTCTGATCTTGAAAAAGGGAAACAAGCTGGAGTTTTATCAACACCTGCTGTAAGGAGTCTAGCAAAGCAGCATGGTATAGATATAACTGAAAAAGGAATCACTACAACTCCATCTGCTGTTTCGCATGCTGATTTTGGAGAACAGCTTCAGGGAGCAGAAGAATGCAGGGATTCCAAAGAGCAATGGTAAAATCNATGTCTCTGGCTGCCAAAGTCCCACATTTTTATTATGTAGATGAGATAAACTGTGATGCCCTAGTGGATCTTAAAACNTCTTTCCAGAAAAATAATCCTTACCCGGATGTCAAGCATACTTTCCTTCCAATATTAATCAAATCACTATCAATGGCCCTCAGCAAGTACCCTTCTATGAACAGTTGCTTCAAAGAGGATGCATTGGAGGTCATCCTCAAAGGTTTGCACAACATTGGAATTGCTATGGCGACATCACATGGTCTAGTTGTGCCAAACATAAAAAATGTTCAGTCTCTTTCCATATTGGAGATAACCAAAGAGCTGGCAAGGTTGCAACGATTGGCTTCAGATAACAAGTTAACTTCTGAGGATATATGTGGTGGGACAATTACTTTGAGCAACATTGGAGCAATTGGTGGAAAGTTTGGTTCCCCACTNCTTAATCTGCCTGAAGTCTCCATTATTGCCATTGGTCGAATTCAGAAAGTTGCACAGTTTGCTGATGATGGAAATGTGCATCCTGTATCACTCATGACTGTAAGTCTTGCATATTTACATTCATAAACTATATATATGAACATGTCAAACATCACATTTTTAAAGAAAACTACAATAATATCCAATGATTCAAGTTCACGGGGTAGCATGTCCACTTTATAGATGACTGCTGAGTTTGTCATTTTACTGAAGAGAACAAAAAAAATGTGATTACGGTGGATCCCCCTAATTTTGCTATTGGGAAGGGCTTCATAACTAATTACCTTATGTCTAAGTTACTGAAAATTCAGCTTGTGTAGTTTGATCATCTTCATTGGCTTCCTAGTTAGATAATTTGGGTTGGTTCAACTTGCATTTAAACAAAGTTGTTTGTAGGTTGATGANAAGGCAAACAGATATTTTTTTCTTGGGTTAACTTACATTATTTATCAAATAGTTATTGTATGTTTATTAATCTAATGTTGTTATTCTTTATTATATGATTTATGAGTGGGTTGNTATGTGATTCTTTTTTCTGCTTCCAGGTTAATATTGGTGCAGATCATAGAGTCTTGGACGGAGCAACCGTTGCAAGGTTTTGCAACGAGTGGAAACAATTAATTGAAAACCCGGAGCTAGTCATGTTGCATTTGAGATGAAACTTGAAGGCAATGGACATTTACTGGAATTGTAATTTAGATGACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	50794	55538	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09699	DBT, bkdB	EC:2.3.1.168	Propanoate metabolism	map00640
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015118.1	PF00364.17	Biotin_lipoyl	80	152	7.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.122
SRR1783600	control	6.160
SRR1783602	moderate drought stress	9.647
SRR1811619	moderate drought stress	9.570

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.563
DRR006520	Root Summer glycyrrhizin high producing strain	6.468
DRR006521	Root Winter glycyrrhizin high producing strain	9.846
DRR006522	Root Winter glycyrrhizin high producing strain	9.540
DRR006523	Root Summer glycyrrhizin low producing strain	14.285
DRR006524	Root Summer glycyrrhizin low producing strain	14.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.589
SRR2868004	Drought Stress (root)	33.097
SRR2967015	Control (root)	45.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.768
SRR9715740	Leaf	6.118
SRR9715741	Leaf	8.217
SRR9715739	Root	1.130
SRR9715742	Root	3.843
SRR9715743	Root	2.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.087
SRR8749028	MeJA induced 9h	15.213
SRR8749029	MeJA induced 9h	8.321
SRR8749030	Uninduced	20.079
SRR8749031	Uninduced	52.136
SRR8749032	Uninduced	28.525

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.396
SRR8400027	Control - Root	7.179