Gene detail

Gene detail information of Glyur000227s00015116

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02340.1	1.00E-116	alpha/beta-Hydrolases superfamily protein
NR	KEH32298.1	0	epoxide hydrolase [Medicago truncatula]
COG	YP_003299257.1	1.00E-82	alpha/beta hydrolase fold protein [Thermomonospora curvata DSM 43183]
trEMBL	tr\|A0A072UTA2\|A0A072UTA2_MEDTR	0	Epoxide hydrolase {ECO:0000313\|EMBL:KEH32298.1}

Sequence

Transcript Sequence

>Glyur000227s00015116.1
GCTTGACAATAATGCTATACCTTATCTTCTCATGCAATGCAAGAATAAACTCATTATTAGTGTTTATAATTAACACAAGCAAAGCGACCCATAGTCTCTCATACACATTTCCCACCAATTAGAGAGACGAGATCTAACACTTAACATAATCGGACTCAGAGAGACATGGAAAAGGTAAATTGCTATATACAGAGACAAGCACGGCAATGTCAATATTTCAGGGGTTTAGGCCACCGCATTGCGTCCGTAATTGCGGCCGCACCAATTATCCGCAATTTTTCACACGACCATGGATCAGTACCAACTAACGGCAACTGTCTATGACAACAACAGCGGTTTAAAATCTTCAATAGAGCACCGAACAGTGAGCGTGAATGGCATAAACATGCACATAGCAGAGAAGGGTACTGAAGGCCCAATGATCCTCTTCATCCATGGCTTCCCCGACCTTTGGTACTCGTGGCGCCACCAGATCACGGCTCTGTCCTCCCTTGGTTACCGCTGCGTGGCGCCGGACCTCCGTGGCTTCGGCGACACCGACGTGCCGGCCACACCGGCATCCTACACGAGCCTCCACGTCGTCGGTGACCTCATCGGACTTCTGGACGCCGTTGCCGGCGAACAAGAGAAGGTGTTTGTGGTGGGTCATGACTGGGGAGCCCTCACTGCTTGGTCCCTTTCCCTCTATCGCCCTGATCGTATCAAAGCTCTCGTTAACTTGAGTGTCGCTTTCAGTCCCAGACACCCCAAAAGAAAACCCCTTGACACCCTCCGAGCAGTGTACGGAAATGATTACTATATCTCCAGATTTCAGTCGTATAGTGCCATACACACTTTCCACCACATAGCAGAATCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGGGTAGAACACCGAACAGTGAGCGTGAATGGCATAAACATGCACATAGCAGATAAGGGTGAAGGCCCATTGATCCTCTTCATCCATGGCTTCCCCGACCTTTGGTATTCTTGGCGCCGCCAGATCACGGCTCTGGCCTCCCTCGGTTACCGCTGCGTGGCGCCGGACCTCCGTGGCTTCGGCGACACCGACGTGCCGGCCACACCGGCATCCTACACGAGCCTCCACGTCGTCGGTGACCTCATCGGACTTCTGGACGCCGTTGCCGGCGAACAAGAGAAGGTGTTTGTGGTGGGTCATGACTGGGGAGCCCTCACTGCTTGGTCCCTTTCCCTCTATCGCCCTGATCGTATCAAAGCTCTCGTTAACTTGAGTGTCGCTTTCAGTCCCAGACACCCCAAAAGAAAACCCCTTGACACCCTCCGAGCAGTGTACGGAAATGATTACTATATCTCCAGATTTCAGGAACCTGGTGATATCGAAGCTGAGTTTGCACAGATTGGCACTGCAAGAGTCCTCAAGGAATTCCTCACATACCGCAACCCTGGTCCACTTTTTCTGCCCNAGGGTAAAGGGTTTGGACACCCAATTGATTCCCCCATTGTGTTGCCCCCATGGTTATCTGAAGAAGAATGTAATTACTATGCCTCCAAATATGAGAAGACCGGCTTCACTGGGGGATTGAACTACTACAGAAATTTGGATCTAAATTGGGAGCTCACTGCTCCGTGGACTGGTGCCCAAATCAAAGTTCCAGTTANGTTTATTGTGGGTGATCTTGACCTGACCTATAATGCACCCGGCGCAAAGGATTACATTCACAAAGGGGGGTTCAANAGAGATGTGCCGCTTCTGGAGGATGTGGTTGTAATCGAAGGGGCAGGGCACTTCCTCCACCAAGAAAGGGCCGATGAGATCAACAAACACATCTATGATTTCTTTCGAAAATTCTAACTAATTTGCTCTGTGCGCCTTCTTGTTCTTGGACATGTGTCTCTGTTCTTGCTCTGTTTGCATCTTTGTTCTTCATTTCTTGCTGTGTCTATTCTCATTATAGTGGGTCTGTGCATGTTTCTGAACTCTTCATGTTCGTGTAAGTGTTTTATTAAGACGAGTGATGTGAATAATGTTATTTGTAGTTAAGGGGAAAGGGGGTGAAACAAAATATGAATATCTTGCAGGTCCATTGGCGGCGGAAGTAATTGAGTCGTNTATAAGAATCTTACCACTCATAGTAACACACGAGAAAGATTTTCATATCATGCTGATCGCTGGTTTGTTTCTTTTCAGTGTAATGCTATATTTGCCAGCACTATTATTGGATGTTTCTTGGTAAAAATGGATACATAGTAATACTATAGCAATATCTATGACNCCATCATAAATCAAGTGGCCTCTTACTGAACGAATCCATGTGCTCCATCATAATCTTTATTTTCCACTGTATCAAACAGTTATCACCATTTTCATGGCGCGTGCATAAAATAGCACTTCCACCGAGACACAGAGTACTGATTCAATGAGAGGAAAGAAAAAAAAATAAAGAAACTGACAAGTAGCGTATAGACTCTACTCCAAATAATGGAGTTCTTTTTTTATGGTGTTCCCCCCTCTCCTGTTTCTCCTTGGCAAGAGATACCAATATCAAGAACTTCCGGGCCTTTTTCTTTTTTCAACATTAAACNCCACGTCCACGAGACCTGTAATACCCGCAGTAATTTTTTGACCTTCTTTAACAGGGCCAACACCTGGGGGAGTGCCTGCATAGCATCATAATCAATGTTAACTGGGCATCCTGTAATGCGTGCATTCTTTGTAATCCAGAAAGGAAGCTGACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00227	41626	46876	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000227s00015116.1	PF12697.2	Abhydrolase_6	45	167	2.20E-25
Glyur000227s00015116.1	PF12697.2	Abhydrolase_6	227	510	1.10E-34
Glyur000227s00015116.2	PF12697.2	Abhydrolase_6	27	310	2.40E-35
Glyur000227s00015116.3	PF12697.2	Abhydrolase_6	45	165	4.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.971
SRR1783600	control	23.617
SRR1783602	moderate drought stress	28.680
SRR1811619	moderate drought stress	29.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.498
DRR006520	Root Summer glycyrrhizin high producing strain	23.747
DRR006521	Root Winter glycyrrhizin high producing strain	57.295
DRR006522	Root Winter glycyrrhizin high producing strain	56.535
DRR006523	Root Summer glycyrrhizin low producing strain	20.503
DRR006524	Root Summer glycyrrhizin low producing strain	23.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.057
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.824

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.867
SRR2868004	Drought Stress (root)	5.577
SRR2967015	Control (root)	4.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.492
SRR9715740	Leaf	6.147
SRR9715741	Leaf	7.841
SRR9715739	Root	3.343
SRR9715742	Root	15.110
SRR9715743	Root	12.253

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.196
SRR8749028	MeJA induced 9h	4.006
SRR8749029	MeJA induced 9h	5.563
SRR8749030	Uninduced	4.887
SRR8749031	Uninduced	4.191
SRR8749032	Uninduced	3.948

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.440
SRR8400027	Control - Root	8.309