Gene detail

Gene detail information of Glyur000226s00010851.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32810.2	7.00E-85	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004495510.1	0	PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9C810\|Y1342_ARATH	2.00E-08	PHD finger protein At1g33420
trEMBL	tr\|A0A072VXY1\|A0A072VXY1_MEDTR	0	RING/FYVE/PHD zinc finger protein, putative {ECO:0000313\|EMBL:KEH42910.1}

Sequence

Transcript Sequence

>Glyur000226s00010851.1
ATGAAAGGGCGATCACACCGCCCTCAGAGTTCGGANCCTCCGGACGATTGGGTCGACGGTTCATGGACGGTAGACTGCATGTGCGGCGTGAACTTTGACGACGGNGAAGAGATGGTGAAATGCGACGAGTGCGGCGTGTGGGTTCACACGCGCTGCTCCCGCTACGTCAAGGGAGACGACATGTTCGCCTGCGACAAGTGCAAGGCCAAATCCAACCCACCCGACAACAACACCGAGGAAACCGAGGTAGCCCAATTGCTCGTCGAGCTCCCCACAAAGACCATCTCCTTGGAGAACAANAACAACAGCAACAACAACAACAATTCCTTCGCCTCCAGAGTCGCCGCTGCTCGTTCGCGCCGCCCTTTCAAGCTCTGGACTGATATCCCCATGGAGGAGAGGGTCCACGTTCAGGGGATCCCCGGCGGCGACCCTTCTCTCTTCGCCNGGAAGACCGTGCCCTCGATTTTCGGTCCCCAGTTGTGGAAATGCACCGGTTATGTCCCTAAGAAGTTCAATTTTCAGTATAGGGAGTTCCCCTCTTCAGATGAGAAGGAGGGTGCGCAGGATAATGATAATGGGGCTGGGGTTCTTTTGTCCTTTTCTAAAGAGACTAGTACTGTATTGGCTTCCCCTGTTGCTGCTTTGGTTGATATGAGATCCANCCACGGCAAGACGGCTCTCAAGGACGTGGGGACCGGAAAGTTTGCCAGCNATGACGCGCTGCCGCGCATCCACAATGCTGTGAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATTCCGGTAAGCGCAGGAAAGAGGACCAGGGGAAAGACCGGAGTGGGAAGAAGCCGCGGGTTAGGACTTCTGATAAAGAGGTAGATCCCAAGAGGAGGACTTCTCATTCGTCTAAAACAGCGTTTACACCCACCAGTGATGCAAAACAATTGGAATTTTATGAAGACAGAGGTCCNAAGGTTTTCAAGGCTGACACTCGGAGCACAAAGAATAAAAACTTAAAAGATATAGTGGTTCAAGATCATATTTCTAATGATTCTTTTGCCGTGGATACCATCATGGAGGAGCCAAATAACAACTTGACCACTACTGAGGAGTCTTCAGAAGCCTTATATCCCAATGCAACAAGACTTAGTCTTTCTGTTGGAGATGTATTGGCGGAAGAGAAGACTGGCCATAAGTTTGTTGAGATGTCTTNTAAGACTGATGATGCTGTTACATCAGTTCTAAAGCATAATCCCATTGCACATGCTTCAGTTAAAAAAAAGGGAAATGACTATGGAGAGCTAAGAGCCNAAGACTACTTCGTCTCACACTATATTGTGATGACATTTCTTGCTTCTACAAACAAGGATGGAGATTGCTCGGAAGCTGATAATGTNGATAGTACTTTAGTAGTTAGAAGCACTGTGAATCCTCACACAGAAGATCATCATGGTTCTGCACCAGAACTTATGGATAACCAAGTTTCTCAAGATCTTGACTGTAACCTGCGTCCTAGCTCTGCAAAATGCAAAATTAAGGAGAAGAGAGAAGATGATGATGATAATTTTAAGCTCTCTAGCTTTCATTCTTCTCCCATCAGTGATCTTAAAGACAATGGAAAGCCATCTGATTACACATCTGATATTGTTAAAGTAAATGATGATGTAGTTACNGGTTTACCATCATGTGGAATTAAGGTGGGTGATATTGACATTTCATCAGAAGCAGTCCCTGGTGATCATACCAATAAACCCAACGAATTACCTGGTAATTTTTGTCATGGAAAACAAGAAGTGGAGGGGCCTGAAGGTTCCTTGGAAACACCAAAGGAATTTTNGGAAACAAAAGATGGTTCAGATTCTACTAAGAATCCATCAAAATCTGAAGCACTTGAATGTCCCCATAAAATGCCAGCATGTGTTGAAAAGTCATCTCCAACTTCATCGACCCTGAACTCCAAATCATTGAGTCGCGACTTCAAATCTGAAGATACTGAAGTCCCTAATCCTTTTTCAAAGCATGGAGTTATAGCTGATTGTAACATTCACATNAAGAATGAAGGTTGTCCTAGTGATGCTGCAAGGGATGAGATTCCNAGGAAACCTGTAAGAGAGCGACCAAAATCTTCGTCGAATTCCAATTCAAAAGGATTACATTCAAGCAGGAATACTCAAAATTCTGTTTCGAAGCAAGTAAATTCAGATGCGAGGGATTCTGTTCATTGTTCTAAAGCATCTTTGGTTCATCAGACTGCAAGTACTTCAGGCTCTAGTGAGACAAACGCATCATTGCACCATCAAAAAGCTTTACAAGTGCAGAATAAGATTTCATCTTCAGNGCCACAGAAAGTTGAAAGGCTTAACCAAACAAACATCCATCCTTCCTCTAAGTTGAACCAGAGCCACGTGCCATCAGTGAATCCTTCTCCAACATCAAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTTTGCTATTACATCAAGAACTGAATAGTTCACCACGTGTACCTCGGGTACCCCGTGCACGCCATGCAGGTAGCTTGCCACAGTTGACTTCTACTAGTGCTACAAGCATGCTAATGAAGCGAACATCGGTTGGAGGAAAGGATCACTATTCGGTATCTAGACGAAAATACAAGGATGCATCTAGAGATGGTTGCAGTTCTCGTGAACCTGAAGATGAAACTAAAAGGATAGAGAAGGAGAAGGAGAAGGGTCAATCATCATCTGATCAGAGAAAACAAGATANGGCATATGTGGATGATGCTTCTGTAAAGGAAGAAGGAGGCCATGCATCTGTGACAGCCACAAACTCTATCACAAGCAATGTTGTTTCTGCCACCCCTGCCATTGCAAACAGTGGTCCACTCTCCCCTCCCGAGGATCAGAATTTGTCATCAATACAGAACTCACCCAGGAATATATCTGATGATGATACAGAAACTGTTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAATGATATTATGAGCAAGGGAAGGCGCATGACATATGAGGAACTCTGTAATGCTGTGCTACCACACTGGCACAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACTCAAGTCACTCTCAGGCCGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGTTGGTTGATCGCGGTCCAAAGACAAATTCCAATAGGAAAAGGCGTAAGCTGGATGCTGAAGAATCCGATGATAATGGATATGGCAAGGGAAAACTTGCAAAAGAGGCCGAAGGGAAGAACTTTGAGTTGCAAAAAGAAGAGTTTCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGCCTGGCCCTACAGGGAAGAGCAGTAAAGGATGTCAGGAGGAGACAAAAAACTGACTCACTAACTGACGAGGACGTCGGTGGTCCATTCTCCAATTCCAGTGAAGAGAGCATGTTTAGTGAGGATGAAATTCAGGTTGGCAGAATATGCCCCACAGGAAGTACATCAGATGATGCGGGTAGTGCCTAATTTCATTTCATGTGGCTACTAAATATCTCAAAGGGTTTACTTTTGCAANAATCTATGCCTTCTTGGCTTGAAGTGGAAGCTTGTCTAGTTGGGGGATGGATTGCTGGCACTTCTTGTGATGTTACGTTGTATTAGTAGTGTAAATATTTCCAATAGTATAGTGTACTATTTTCATGCATGAGGCAGAACTGAGTAGGTTATGTAGAATCTGTAACTTGTAAGTGATTAAAATGTTCAGTTAGAGAGCAAGAAAGAATGTACAATTGGCTTTAATTGAGAAATACCAATTTAGCTGGGAGCCTGGGATTCGATAAATGTTTTTATGACGTTTAGGTTTGGCATTTTACACTCTTGCAGCTTCCGAAGT

Protein Sequence

>Glyur000226s00010851.1
MKGRSHRPQSSXPPDDWVDGSWTVDCMCGVNFDDGEEMVKCDECGVWVHTRCSRYVKGDDMFACDKCKAKSNPPDNNTEETEVAQLLVELPTKTISLENXNNSNNNNNSFASRVAAARSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAXKTVPSIFGPQLWKCTGYVPKKFNFQYREFPSSDEKEGAQDNDNGAGVLLSFSKETSTVLASPVAALVDMRSXHGKTALKDVGTGKFASXDALPRIHNAVKKERSLLRPLVVHSGKRRKEDQGKDRSGKKPRVRTSDKEVDPKRRTSHSSKTAFTPTSDAKQLEFYEDRGPKVFKADTRSTKNKNLKDIVVQDHISNDSFAVDTIMEEPNNNLTTTEESSEALYPNATRLSLSVGDVLAEEKTGHKFVEMSXKTDDAVTSVLKHNPIAHASVKKKGNDYGELRAXDYFVSHYIVMTFLASTNKDGDCSEADNVDSTLVVRSTVNPHTEDHHGSAPELMDNQVSQDLDCNLRPSSAKCKIKEKREDDDDNFKLSSFHSSPISDLKDNGKPSDYTSDIVKVNDDVVTGLPSCGIKVGDIDISSEAVPGDHTNKPNELPGNFCHGKQEVEGPEGSLETPKEFXETKDGSDSTKNPSKSEALECPHKMPACVEKSSPTSSTLNSKSLSRDFKSEDTEVPNPFSKHGVIADCNIHXKNEGCPSDAARDEIPRKPVRERPKSSSNSNSKGLHSSRNTQNSVSKQVNSDARDSVHCSKASLVHQTASTSGSSETNASLHHQKALQVQNKISSSXPQKVERLNQTNIHPSSKLNQSHVPSVNPSPTSNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSTSATSMLMKRTSVGGKDHYSVSRRKYKDASRDGCSSREPEDETKRIEKEKEKGQSSSDQRKQDXAYVDDASVKEEGGHASVTATNSITSNVVSATPAIANSGPLSPPEDQNLSSIQNSPRNISDDDTETVGRPVHHTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTNSNRKRRKLDAEESDDNGYGKGKLAKEAEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKTDSLTDEDVGGPFSNSSEESMFSEDEIQVGRICPTGSTSDDAGSA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00226	224335	230777	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.963
SRR1783600	control	13.051
SRR1783602	moderate drought stress	17.488
SRR1811619	moderate drought stress	17.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.750
DRR006520	Root Summer glycyrrhizin high producing strain	14.868
DRR006521	Root Winter glycyrrhizin high producing strain	15.763
DRR006522	Root Winter glycyrrhizin high producing strain	15.057
DRR006523	Root Summer glycyrrhizin low producing strain	15.505
DRR006524	Root Summer glycyrrhizin low producing strain	15.343
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.890
SRR2868004	Drought Stress (root)	25.549
SRR2967015	Control (root)	29.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.745
SRR9715740	Leaf	17.420
SRR9715741	Leaf	18.522
SRR9715739	Root	2.031
SRR9715742	Root	16.977
SRR9715743	Root	13.035

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.545
SRR8749028	MeJA induced 9h	14.515
SRR8749029	MeJA induced 9h	11.266
SRR8749030	Uninduced	13.328
SRR8749031	Uninduced	12.926
SRR8749032	Uninduced	11.441

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.775
SRR8400027	Control - Root	23.012