Gene detail information of Glyur000226s00010850.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G10570.10ubiquitin-specific protease 9
NRXP_003556429.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max]
COGYP_004671579.13.00E-06hypothetical protein SNE_A12110 [Simkania negevensis Z]
Swissprottr|Q9ZSB5|UBP10_ARATH0Ubiquitin carboxyl-terminal hydrolase 10
trEMBLtr|I1NIH9|I1NIH9_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00226209959219674-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0016579  protein deubiquitination


molecular_function

GO:0004843  thiol-dependent ubiquitin-specific protease activity

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000226s00010850.1PF06337.7DUSP431487.60E-24
Glyur000226s00010850.1PF00443.24UCH3008845.00E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.290
SRR1783600control16.350
SRR1783602moderate drought stress15.492
SRR1811619moderate drought stress15.372

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.870
DRR006520Root Summer glycyrrhizin high producing strain17.507
DRR006521Root Winter glycyrrhizin high producing strain18.561
DRR006522Root Winter glycyrrhizin high producing strain18.191
DRR006523Root Summer glycyrrhizin low producing strain20.123
DRR006524Root Summer glycyrrhizin low producing strain20.423
DRR006525Leaf Summer glycyrrhizin high producing strain11.353
DRR006526Leaf Summer glycyrrhizin high producing strain11.250

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)29.782
SRR2868004Drought Stress (root)33.493
SRR2967015Control (root)31.377

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf17.497
SRR9715740Leaf18.420
SRR9715741Leaf23.916
SRR9715739Root2.445
SRR9715742Root17.071
SRR9715743Root14.469

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.057
SRR8749028MeJA induced 9h24.159
SRR8749029MeJA induced 9h15.480
SRR8749030Uninduced16.557
SRR8749031Uninduced22.636
SRR8749032Uninduced14.972

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root25.822
SRR8400027Control - Root25.613

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved